Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304C08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.07 |tif11||translation initiation factor eIF1A|Schizosa...   164   8e-42
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb...    28   0.73 
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      28   0.97 
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    27   1.7  
SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces pomb...    27   2.2  
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe...    25   5.2  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    25   6.8  
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    25   6.8  
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce...    25   6.8  
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   9.0  
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...    25   9.0  

>SPBC25H2.07 |tif11||translation initiation factor
           eIF1A|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 138

 Score =  164 bits (398), Expect = 8e-42
 Identities = 76/108 (70%), Positives = 87/108 (80%), Gaps = 1/108 (0%)
 Frame = +3

Query: 132 LVFKEDGQEYAQVTKMLGNGRLEAMCFDGIKRLCHIRGKLRKKVWINQGDIILIGLRDYQ 311
           L + E+GQ YAQVTKMLGNGR+EA CFDG+KRL HIRGKLRKKVWINQGDIIL+ LR++Q
Sbjct: 26  LTYAEEGQMYAQVTKMLGNGRIEAACFDGVKRLGHIRGKLRKKVWINQGDIILLSLREFQ 85

Query: 312 DAKADVILKYTPDEARNLKTYGEFPETVRINETVVYSVDGLDE-DIEF 452
           D K DVILKYT DEAR LK  GE PET +INET  +  +G D+ D EF
Sbjct: 86  DEKGDVILKYTADEARTLKNQGELPETAKINETDTFGAEGEDDLDFEF 133


>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 657

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 16/60 (26%), Positives = 26/60 (43%)
 Frame = -1

Query: 224 FDAIKAHGLQAAITEHLCDLGVLLSVFLKDQLTFFSFIFVLSSPPIFSSFTFVFRHVLYD 45
           FDA   H  +  +   LCD   L  V  +    F++ I+       FS   + F++ L+D
Sbjct: 418 FDAALTHRDRECLIHDLCDNDQLNDVVREFMNAFYNIIYEAHQAADFSQAIYDFQYFLWD 477


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
 Frame = -1

Query: 167 LGVLLSVFLKDQLTFFSFIFVLSSPPIFSSFTFVFRHVLYDFYY---KHKQL 21
           + + +  +  + + FF F F  S   +FS F+F+F  + ++F++   +HK L
Sbjct: 93  IAIFIHPYDSNVVPFFCFFFYFS---LFSFFSFLFTSLHFNFFFRLCRHKHL 141


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +3

Query: 309 QDAKADVILKYTPDEARNLKTYGEFPETVRINETVVYSVDGL 434
           ++ K++V ++YT D A      GE   ++   E V+YS+  L
Sbjct: 511 RNRKSNVKIEYTEDFATGFAISGEISHSINNLEFVLYSLSSL 552


>SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 351

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/55 (23%), Positives = 27/55 (49%)
 Frame = +1

Query: 94  GEERTKMKLKNVSWSLRKTDKSTPKSQRCSVMAAWRPCALMASNACVTSEGNYEK 258
           G E+  +  +  +W    ++ S   S  CS+ A W   +L+++  CV + G  ++
Sbjct: 220 GGEKWNVAAECDAWQANNSELS---SSICSISANWSTLSLLSTEGCVYAFGRCDR 271


>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 198 EAMCFDGIKRLCHIRG 245
           +A C +G + LCH+ G
Sbjct: 623 DAQCLEGFRALCHLEG 638


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
            Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 118  LKNVSWSLRKTDKSTPKSQRCSVMA 192
            L++ +W   + D ST    RCS++A
Sbjct: 1223 LRSKNWKYLRLDGSTKSDDRCSLLA 1247


>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 403 LMRTVSGNSPYVFRFLASSGVYFKMTSAF 317
           L++ V  N  ++F  LA SGV FK+ + F
Sbjct: 539 LIKFVWRNKVFLFGILALSGVIFKLINFF 567


>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 818

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +1

Query: 70  KVKEEKIGGEERTKMKLKNVSWSLRKTDKSTPKSQR 177
           K KEEK  GE  +  KLKN   +L +     PK  +
Sbjct: 259 KSKEEKSHGENESGGKLKNKMSTLFRRKTIMPKKDK 294


>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 500

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 95  PPIFSSFTFVFRHVLYDFYYK 33
           P + SSF  +F H+LY   Y+
Sbjct: 160 PMVVSSFAHIFGHLLYCMAYR 180


>SPAC13G6.06c |||glycine cleavage complex subunit
           P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 269 YPHFFS*FPSDVTQAFDAIKAHGLQ 195
           YP  F  F  DV +A + I  HG Q
Sbjct: 714 YPSTFGIFEPDVKEALEVIHEHGGQ 738


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,783,455
Number of Sequences: 5004
Number of extensions: 32282
Number of successful extensions: 86
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)