Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304C08f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0256 + 13528331-13528765 163 1e-40
02_02_0566 + 11567415-11567843 160 7e-40
03_01_0098 - 773958-774144,775776-775902,776013-776088,776208-77... 35 0.046
02_05_1082 - 33976038-33978035 33 0.11
04_04_0822 + 28352941-28353825,28353863-28354016,28354714-283547... 31 0.56
01_06_1385 + 36930377-36930681,36930769-36930895,36931515-36932360 29 2.3
07_03_1604 - 28089032-28089079,28089161-28089371,28089484-280898... 29 3.0
06_01_0447 + 3159092-3159543,3159699-3159825,3160640-3161392 28 5.2
04_04_0979 - 29862280-29862444,29862718-29862999,29863831-298639... 28 5.2
11_03_0093 - 9852075-9852871,9852911-9853009,9853208-9853646,985... 27 6.9
04_04_1096 + 30855192-30855225,30856135-30856208,30856293-308564... 27 6.9
04_04_0590 + 26457514-26457801,26458849-26459325,26459817-264600... 27 6.9
08_01_0475 - 4185534-4186047,4187437-4187708,4188032-4188979,419... 27 9.1
05_03_0321 + 12363355-12363614,12363689-12364145,12364165-12365718 27 9.1
03_06_0394 + 33592780-33593310,33593890-33594013,33594233-335943... 27 9.1
03_04_0242 - 19238016-19238679,19239487-19239929 27 9.1
03_01_0156 - 1250251-1250436,1250633-1250674,1250794-1250835,125... 27 9.1
01_07_0286 - 42519269-42519754,42524657-42525253,42525277-42526311 27 9.1
>06_02_0256 + 13528331-13528765
Length = 144
Score = 163 bits (395), Expect = 1e-40
Identities = 77/103 (74%), Positives = 86/103 (83%)
Frame = +3
Query: 132 LVFKEDGQEYAQVTKMLGNGRLEAMCFDGIKRLCHIRGKLRKKVWINQGDIILIGLRDYQ 311
LVFKEDGQEYAQVT+MLGNGR EA+C DG KRLCHIRGK+ KKVWI GDIIL+GLRDYQ
Sbjct: 26 LVFKEDGQEYAQVTRMLGNGRCEAICVDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQ 85
Query: 312 DAKADVILKYTPDEARNLKTYGEFPETVRINETVVYSVDGLDE 440
D KADVILKY DEAR LK YGE P+T+R+NE V VDG ++
Sbjct: 86 DDKADVILKYMNDEARLLKAYGELPDTLRLNEGV--DVDGPED 126
>02_02_0566 + 11567415-11567843
Length = 142
Score = 160 bits (388), Expect = 7e-40
Identities = 75/104 (72%), Positives = 81/104 (77%)
Frame = +3
Query: 132 LVFKEDGQEYAQVTKMLGNGRLEAMCFDGIKRLCHIRGKLRKKVWINQGDIILIGLRDYQ 311
LVFKEDGQEYAQV +MLGNGR EA C DG KRLCHIRGK+ KKVWI GDI+L+GLRDYQ
Sbjct: 26 LVFKEDGQEYAQVARMLGNGRCEAQCIDGTKRLCHIRGKMHKKVWIAAGDIVLVGLRDYQ 85
Query: 312 DAKADVILKYTPDEARNLKTYGEFPETVRINETVVYSVDGLDED 443
D KADVILKY DEAR LK YGE P+ VR+NE VV D D
Sbjct: 86 DDKADVILKYMNDEARLLKAYGEIPDHVRLNEGVVDEDDAAAHD 129
>03_01_0098 -
773958-774144,775776-775902,776013-776088,776208-776321
Length = 167
Score = 34.7 bits (76), Expect = 0.046
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +3
Query: 147 DGQEYAQVTKMLGNGRLEAMCFDGIKRLCHIRGKLRKKVWINQGDIILI 293
+G+ QV + G+ +E M G+K L K +K WI G+ +++
Sbjct: 21 EGESIMQVLALRGSNVIEVMDAKGVKSLALFPAKFQKSFWIKNGNFVVV 69
>02_05_1082 - 33976038-33978035
Length = 665
Score = 33.5 bits (73), Expect = 0.11
Identities = 10/28 (35%), Positives = 21/28 (75%)
Frame = +3
Query: 333 LKYTPDEARNLKTYGEFPETVRINETVV 416
+K+ PD+ ++LK YG++P +++ + T V
Sbjct: 229 IKHNPDDVKSLKMYGKYPRSIKCDPTTV 256
>04_04_0822 +
28352941-28353825,28353863-28354016,28354714-28354754,
28355060-28355310,28355411-28355591,28356138-28356323,
28356396-28356569,28356992-28357150,28357424-28357501,
28357612-28357748,28357980-28358044,28358115-28358148,
28358216-28358372,28359135-28359196,28360041-28360118,
28360940-28361042
Length = 914
Score = 31.1 bits (67), Expect = 0.56
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +3
Query: 258 KVWINQGDIILIGLRDYQDAKADVILKYTPDEARNLKTYGEFPE-TVRINETVVYSVDGL 434
KV + +GD++ LR AD+ + RN ++Y E + +VRI T V+S D +
Sbjct: 244 KVEVEEGDVVGKALRKCARISADLRQELYGSSTRNCESYAEIDDSSVRI-VTQVWSFDSM 302
Query: 435 D 437
D
Sbjct: 303 D 303
>01_06_1385 + 36930377-36930681,36930769-36930895,36931515-36932360
Length = 425
Score = 29.1 bits (62), Expect = 2.3
Identities = 19/77 (24%), Positives = 35/77 (45%)
Frame = +3
Query: 132 LVFKEDGQEYAQVTKMLGNGRLEAMCFDGIKRLCHIRGKLRKKVWINQGDIILIGLRDYQ 311
+V +++A + K L GR+ C + + H+R ++K VW + D +LI
Sbjct: 107 MVILHGDRKWATIAKSLP-GRIGKQCRE--RWTNHLRPDIKKDVWTEEDDRMLIEAHKTY 163
Query: 312 DAKADVILKYTPDEARN 362
+ VI + P + N
Sbjct: 164 GNRWSVIARCLPGRSEN 180
>07_03_1604 -
28089032-28089079,28089161-28089371,28089484-28089853,
28090034-28090199
Length = 264
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -1
Query: 176 LCDLGVLLSVFLKDQLTFFSFIFVLSSPPIFS 81
+ L ++L VF+ Q F+F V SSPP+FS
Sbjct: 1 MAPLLLILLVFMPCQTMLFTFDRVTSSPPLFS 32
>06_01_0447 + 3159092-3159543,3159699-3159825,3160640-3161392
Length = 443
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = +3
Query: 234 HIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEARN 362
H+R ++K W + DI+LI K I K+ P N
Sbjct: 187 HLRPNIKKDTWSEEEDIVLIQTHKEVGNKWAEIAKHLPGRTEN 229
>04_04_0979 -
29862280-29862444,29862718-29862999,29863831-29863929,
29864037-29864366
Length = 291
Score = 27.9 bits (59), Expect = 5.2
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +1
Query: 76 KEEKIGGEERTKMKLKNVSWS 138
+EE+ GGE+R K+ + N+ WS
Sbjct: 70 EEEEEGGEKRRKLYVANIPWS 90
>11_03_0093 -
9852075-9852871,9852911-9853009,9853208-9853646,
9853803-9854129
Length = 553
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -1
Query: 218 AIKAHGLQAAITEHLCDLGVLLSVFLKDQLTFFSFIFVLSSP 93
+I+AH A LCDLG +SV KD +F + S+P
Sbjct: 412 SIRAHQFDRA----LCDLGASVSVMPKDVFDKLNFTVLASTP 449
>04_04_1096 +
30855192-30855225,30856135-30856208,30856293-30856467,
30856842-30856918,30857042-30857279,30857414-30857478,
30857628-30858086,30858253-30858465,30858613-30859002
Length = 574
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +3
Query: 270 NQGDIILIGLRDYQDAKADVILKYTPDEARNLKTYGEFPETVRIN 404
NQ D ++ +Y+DAK VI YT D YG + T N
Sbjct: 310 NQHDFVI----EYEDAKFFVIKSYTEDHVHKSIKYGVWASTASGN 350
>04_04_0590 +
26457514-26457801,26458849-26459325,26459817-26460027,
26460219-26460376,26460461-26460531,26460707-26460812,
26460880-26460966,26461591-26462148,26462245-26462308,
26463352-26463485,26463568-26463621,26464321-26464417,
26465620-26465825,26465901-26465984,26466265-26466330,
26466883-26466956,26467664-26467751,26467830-26467928
Length = 973
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -2
Query: 205 MASKRPLPSIFVTWAYSCPSSL 140
M SKR LP++ W Y PS L
Sbjct: 112 MTSKRNLPNLACFWGYKVPSGL 133
>08_01_0475 -
4185534-4186047,4187437-4187708,4188032-4188979,
4190096-4190387,4190486-4191357,4192298-4192354,
4192391-4192504,4192966-4193595
Length = 1232
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +3
Query: 153 QEYAQVTKMLGNGRLEAMCFDGIKRLCHIRGKLRKK 260
QE + ++ NG L +C D ++ + H+R R+K
Sbjct: 615 QEISGKDRIFLNGNLVGVCADSVEFVLHLRSMRRRK 650
>05_03_0321 + 12363355-12363614,12363689-12364145,12364165-12365718
Length = 756
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = -1
Query: 176 LCDLGVLLSVFLKDQLTFFSFIFVLSSPPI 87
LCDLG +SV KD F+F VLS P+
Sbjct: 544 LCDLGASVSVMPKDVFDKFNFT-VLSPTPM 572
>03_06_0394 +
33592780-33593310,33593890-33594013,33594233-33594376,
33594463-33594615,33594973-33595088,33595253-33595420,
33595514-33595744,33596229-33596378
Length = 538
Score = 27.1 bits (57), Expect = 9.1
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 9/96 (9%)
Frame = +3
Query: 186 NGRLEAMCFD-GIKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKA-DVILKYTPDEAR 359
NG+L F GI++L + K+ ++ DI G+ DYQ+ A + ++ ++
Sbjct: 382 NGQLTFEDFKAGIRKLGNQMPDSDLKILMDAADIDKNGILDYQEFVAVSIHVRKIGNDEH 441
Query: 360 NLKTYGEFP-------ETVRINETVVYSVDGLDEDI 446
K + F E + E +V +DG DEDI
Sbjct: 442 IQKAFSYFDQNKSGYIEIEELREALVDEIDGNDEDI 477
>03_04_0242 - 19238016-19238679,19239487-19239929
Length = 368
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 176 LCDLGVLLSVFLKDQLTFFSFIFVLSSP 93
LCDLG +SV LKD +F + +P
Sbjct: 156 LCDLGASVSVMLKDVFDKLNFTVLAPTP 183
>03_01_0156 -
1250251-1250436,1250633-1250674,1250794-1250835,
1250935-1251034,1251125-1251186,1251333-1251356
Length = 151
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 61 RKTKVKEEKIGGEERTKMKLKNVSWSLRKTDKSTP 165
RKTK+ EE++ +MKL+ + LR+ K+ P
Sbjct: 61 RKTKLLEEQVAKLREKEMKLRKDNEELREKCKNQP 95
>01_07_0286 - 42519269-42519754,42524657-42525253,42525277-42526311
Length = 705
Score = 27.1 bits (57), Expect = 9.1
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = +1
Query: 58 CRKTKVKEEKIGGEERTKMKLKNVSWSLRKTDKSTPKSQRCSVMAAWRPCALMASNACVT 237
CR++ EE G EERT + W L K++ + S +V AA + + CV
Sbjct: 615 CRRSMEMEEAAGEEERTLAEWA-YEWLLVKSEAKSAMSSDETVEAAEVERVVRVAMWCVQ 673
Query: 238 SE 243
+E
Sbjct: 674 AE 675
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,138,343
Number of Sequences: 37544
Number of extensions: 199990
Number of successful extensions: 479
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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