Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304C08f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099920-3|AAK29845.1|  216|Caenorhabditis elegans Hypothetical ...   150   5e-37
AF039038-6|AAK21431.2|  629|Caenorhabditis elegans Hypothetical ...    30   1.2  
Z70783-8|CAA94859.1|  175|Caenorhabditis elegans Hypothetical pr...    28   3.5  

>AF099920-3|AAK29845.1|  216|Caenorhabditis elegans Hypothetical
           protein H06H21.3 protein.
          Length = 216

 Score =  150 bits (364), Expect = 5e-37
 Identities = 67/92 (72%), Positives = 76/92 (82%)
 Frame = +3

Query: 132 LVFKEDGQEYAQVTKMLGNGRLEAMCFDGIKRLCHIRGKLRKKVWINQGDIILIGLRDYQ 311
           L  KE+GQEY QV+KMLGNGR++  CFDG +R+CHIRGKLRKKVWIN GDIIL+GLRDYQ
Sbjct: 26  LDLKEEGQEYGQVSKMLGNGRVQVFCFDGKQRVCHIRGKLRKKVWINVGDIILVGLRDYQ 85

Query: 312 DAKADVILKYTPDEARNLKTYGEFPETVRINE 407
           D K DVILKYTPDEAR LK  G  PE  ++NE
Sbjct: 86  DDKGDVILKYTPDEARRLKNEGLIPENAKLNE 117


>AF039038-6|AAK21431.2|  629|Caenorhabditis elegans Hypothetical
           protein K06A5.1 protein.
          Length = 629

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +1

Query: 46  SYKTCRKTKVKEEKIGGEERTKMKLKNVSWSLRKTDKSTP 165
           S KT RKTK+++ KI      K ++ +  WS+ ++ K  P
Sbjct: 102 SEKTPRKTKLRDGKIIDSNDQKQEVSSRKWSVGRSKKRPP 141


>Z70783-8|CAA94859.1|  175|Caenorhabditis elegans Hypothetical
           protein ZK856.11 protein.
          Length = 175

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
 Frame = +3

Query: 162 AQVTKMLGNGRLEAMCFDGIKRLCHIRGKLRKKVWINQGDIILI-GLRDYQDAKADVILK 338
           AQV +  GN   E +  +G   +  +  K RK VW+ +   +++  + +    K ++   
Sbjct: 28  AQVRQSRGNNLHEVLDQNGDSYVVSMPTKFRKSVWLRRDQFVVVRPITEGDKVKGEIEYI 87

Query: 339 YTPDEARNLKTYGEFP 386
              D    ++  G++P
Sbjct: 88  LDQDNVLYIRELGKWP 103


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,792,372
Number of Sequences: 27780
Number of extensions: 178130
Number of successful extensions: 571
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)