Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304C08f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g35680.2 68418.m04264 eukaryotic translation initiation facto... 163 6e-41
At5g35680.1 68418.m04263 eukaryotic translation initiation facto... 163 6e-41
At2g04520.1 68415.m00458 eukaryotic translation initiation facto... 162 1e-40
At2g40780.1 68415.m05031 hypothetical protein 35 0.029
At1g17600.1 68414.m02173 disease resistance protein (TIR-NBS-LRR... 31 0.62
At3g27785.1 68416.m03466 myb family transcription factor (MYB118... 29 1.4
At4g38270.1 68417.m05406 glycosyl transferase family 8 protein c... 28 4.4
At2g03250.1 68415.m00278 EXS family protein / ERD1/XPR1/SYG1 fam... 28 4.4
At5g40360.1 68418.m04896 myb family transcription factor (MYB115... 27 5.8
At5g35180.1 68418.m04169 expressed protein 27 7.7
At2g07690.1 68415.m00993 minichromosome maintenance family prote... 27 7.7
>At5g35680.2 68418.m04264 eukaryotic translation initiation factor
1A, putative / eIF-1A, putative / eIF-4C, putative
strong similarity to translation initiation factor
(eIF-1A) [Beta vulgaris] GI:17977975; contains Pfam
profile PF01176: Eukaryotic initiation factor 1A
Length = 145
Score = 163 bits (396), Expect = 6e-41
Identities = 74/105 (70%), Positives = 85/105 (80%)
Frame = +3
Query: 132 LVFKEDGQEYAQVTKMLGNGRLEAMCFDGIKRLCHIRGKLRKKVWINQGDIILIGLRDYQ 311
L+FKEDGQEYAQV +MLGNGR + MC DG+KRLCHIRGK+ KKVWI GDIIL+GLRDYQ
Sbjct: 26 LIFKEDGQEYAQVLRMLGNGRCDVMCIDGVKRLCHIRGKMHKKVWIAAGDIILVGLRDYQ 85
Query: 312 DAKADVILKYTPDEARNLKTYGEFPETVRINETVVYSVDGLDEDI 446
D KADVILKY DEAR LK YGE PE R+NE +V +D D+D+
Sbjct: 86 DDKADVILKYMSDEARLLKAYGELPENTRLNEGIVGDLDD-DDDV 129
>At5g35680.1 68418.m04263 eukaryotic translation initiation factor
1A, putative / eIF-1A, putative / eIF-4C, putative
strong similarity to translation initiation factor
(eIF-1A) [Beta vulgaris] GI:17977975; contains Pfam
profile PF01176: Eukaryotic initiation factor 1A
Length = 145
Score = 163 bits (396), Expect = 6e-41
Identities = 74/105 (70%), Positives = 85/105 (80%)
Frame = +3
Query: 132 LVFKEDGQEYAQVTKMLGNGRLEAMCFDGIKRLCHIRGKLRKKVWINQGDIILIGLRDYQ 311
L+FKEDGQEYAQV +MLGNGR + MC DG+KRLCHIRGK+ KKVWI GDIIL+GLRDYQ
Sbjct: 26 LIFKEDGQEYAQVLRMLGNGRCDVMCIDGVKRLCHIRGKMHKKVWIAAGDIILVGLRDYQ 85
Query: 312 DAKADVILKYTPDEARNLKTYGEFPETVRINETVVYSVDGLDEDI 446
D KADVILKY DEAR LK YGE PE R+NE +V +D D+D+
Sbjct: 86 DDKADVILKYMSDEARLLKAYGELPENTRLNEGIVGDLDD-DDDV 129
>At2g04520.1 68415.m00458 eukaryotic translation initiation factor
1A, putative / eIF-1A, putative / eIF-4C, putative
strong similarity to translation initiation factor
(eIF-1A) [Beta vulgaris] GI:17977975; contains Pfam
profile PF01176: Eukaryotic initiation factor 1A
Length = 145
Score = 162 bits (393), Expect = 1e-40
Identities = 73/104 (70%), Positives = 84/104 (80%)
Frame = +3
Query: 132 LVFKEDGQEYAQVTKMLGNGRLEAMCFDGIKRLCHIRGKLRKKVWINQGDIILIGLRDYQ 311
L+FKEDGQEYAQV +MLGNGR EAMC DG KRLCHIRGK+ KKVWI GDI+L+GLRDYQ
Sbjct: 26 LIFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIVLVGLRDYQ 85
Query: 312 DAKADVILKYTPDEARNLKTYGEFPETVRINETVVYSVDGLDED 443
D KADVILKY DEAR LK YGE PE R+NE +V ++ D++
Sbjct: 86 DDKADVILKYMSDEARLLKAYGELPENTRLNEGIVGDLEDDDDN 129
>At2g40780.1 68415.m05031 hypothetical protein
Length = 171
Score = 35.1 bits (77), Expect = 0.029
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +3
Query: 144 EDGQEYAQVTKMLGNGRLEAMCFDGIKRLCHIRGKLRKKVWINQGDIILI 293
E+ Q AQV + G+ ++E M G L K R+ +WI +G ++I
Sbjct: 20 EECQSIAQVVSLRGSNQIEIMDAKGENSLALFPAKFRESMWIRRGSFVVI 69
>At1g17600.1 68414.m02173 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1025
Score = 30.7 bits (66), Expect = 0.62
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +3
Query: 165 QVTKMLGNGRLEAMCFDGIKRLCHIRGKLRKKVWINQGDIILIGLRD 305
++ K LGN ++ + DG+ ++ + ++K W G I+I RD
Sbjct: 280 EIKKRLGNQKV-FLVLDGVDKVAQVHALAKEKNWFGPGSRIIITTRD 325
>At3g27785.1 68416.m03466 myb family transcription factor (MYB118)
contains PFAM profile: PF00249 myb-like DNA binding
domain
Length = 437
Score = 29.5 bits (63), Expect = 1.4
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +3
Query: 153 QEYAQVTKMLGNGRLEAMCFDGIKRLCHIRGKLRKKVWINQGDIILI 293
++++Q+ KML GR+ C + H+R ++K W + DIILI
Sbjct: 210 KKWSQIAKML-QGRVGKQCRERWHN--HLRPDIKKDGWTEEEDIILI 253
>At4g38270.1 68417.m05406 glycosyl transferase family 8 protein
contains Pfam profile: PF01501 glycosyl transferase
family 8
Length = 680
Score = 27.9 bits (59), Expect = 4.4
Identities = 13/48 (27%), Positives = 21/48 (43%)
Frame = +3
Query: 300 RDYQDAKADVILKYTPDEARNLKTYGEFPETVRINETVVYSVDGLDED 443
RDY+ AD ILK D+ K Y ++ + V+ + E+
Sbjct: 207 RDYESPNADAILKLMRDQIIMAKAYANIAKSKNVTNLYVFLMQQCGEN 254
>At2g03250.1 68415.m00278 EXS family protein / ERD1/XPR1/SYG1 family
protein similar to PHO1 protein [Arabidopsis thaliana]
GI:20069032; contains Pfam profiles PF03105: SPX domain,
PF03124: EXS family
Length = 756
Score = 27.9 bits (59), Expect = 4.4
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -1
Query: 140 KDQLTFFSFIFVLSSPPIFSSFTFVFRHVL 51
KD F +F+F++S+ P FS F R +L
Sbjct: 562 KDSQVFNTFLFIVSAFPFFSRFLQCMRRML 591
>At5g40360.1 68418.m04896 myb family transcription factor (MYB115)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 359
Score = 27.5 bits (58), Expect = 5.8
Identities = 19/78 (24%), Positives = 33/78 (42%)
Frame = +3
Query: 132 LVFKEDGQEYAQVTKMLGNGRLEAMCFDGIKRLCHIRGKLRKKVWINQGDIILIGLRDYQ 311
+V + + + + KM GR+ C + H+R ++K W + D ILI +
Sbjct: 172 MVKSKGTKNWTSIAKMF-QGRVGKQCRERWHN--HLRPNIKKNDWSEEEDQILIEVHKIV 228
Query: 312 DAKADVILKYTPDEARNL 365
K I K P + N+
Sbjct: 229 GNKWTEIAKRLPGRSENI 246
>At5g35180.1 68418.m04169 expressed protein
Length = 778
Score = 27.1 bits (57), Expect = 7.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 109 KMKLKNVSWSLRKTDKSTPKSQRCS 183
K+KLKNVSW++ PK+ S
Sbjct: 506 KVKLKNVSWAIASLSLKRPKAPGAS 530
>At2g07690.1 68415.m00993 minichromosome maintenance family protein
/ MCM family protein similar to SP|P55862 DNA
replication licensing factor MCM5 (CDC46 homolog)
{Xenopus laevis}; contains Pfam profile PF00493:
MCM2/3/5 family
Length = 727
Score = 27.1 bits (57), Expect = 7.7
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +3
Query: 261 VWINQGDIILIGLRDYQDAKADVILKYTPDEARNLKTYGEFPETVR-INETVVYSVDGLD 437
V I Q I ++GL D +A + +TPDE K + + + + I + S+ G
Sbjct: 282 VAIRQPYIRVVGLEDTNEASSRGPANFTPDEEEEFKKFADSQDVYKNICTKIAPSIFG-H 340
Query: 438 EDIE 449
ED++
Sbjct: 341 EDVK 344
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,223,902
Number of Sequences: 28952
Number of extensions: 167328
Number of successful extensions: 538
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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