Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304C07f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25938| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_24662| Best HMM Match : DUF229 (HMM E-Value=1.2e-26)                27   9.4  
SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27)                 27   9.4  

>SB_25938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 447

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 237 TIGFLNN*VGKLY*KGHSIYDD 302
           T+ FLNN  G ++ KG S++D+
Sbjct: 348 TLAFLNNLAGNVFFKGFSVFDE 369


>SB_24662| Best HMM Match : DUF229 (HMM E-Value=1.2e-26)
          Length = 972

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 237 TIGFLNN*VGKLY*KGHSIYDD 302
           T  FLNN  G ++ KG S++D+
Sbjct: 348 TFAFLNNLAGNVFFKGFSVFDE 369


>SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27)
          Length = 1492

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 486 ETLRLFTCMECPNNY 442
           E +R FTC+ CPN Y
Sbjct: 787 EIMRTFTCINCPNFY 801


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,529,418
Number of Sequences: 59808
Number of extensions: 281911
Number of successful extensions: 514
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)