Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304C07f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-...    35   0.031
Z81529-12|CAB04303.1|  492|Caenorhabditis elegans Hypothetical p...    30   1.2  
AL023816-5|CAA19434.1|  492|Caenorhabditis elegans Hypothetical ...    30   1.2  
AL110479-1|CAB60310.2|  311|Caenorhabditis elegans Hypothetical ...    28   3.5  
Z79598-1|CAB01867.3|  586|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z82261-7|CAH60757.2|  300|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
            x-hybridizingprotein 1, isoform a protein.
          Length = 1876

 Score = 35.1 bits (77), Expect = 0.031
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 516  CPLTTRELPGETLRLFTCMECPNNYPWILDPQG 418
            C  +T  L  +  +  TC+ CP  YPW+ +P G
Sbjct: 1841 CLYSTPSLSSQEHQFLTCLPCPTMYPWLENPAG 1873


>Z81529-12|CAB04303.1|  492|Caenorhabditis elegans Hypothetical
           protein T05G11.1 protein.
          Length = 492

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +2

Query: 224 CMYCNHRIFK*LSGKIILERTLNLRRQNNITCCN 325
           C+ CNH++ K ++ +  +E+  N+R   N  CCN
Sbjct: 338 CVLCNHQMPKTVTVQEHMEKEHNIRLVFNCRCCN 371


>AL023816-5|CAA19434.1|  492|Caenorhabditis elegans Hypothetical
           protein T05G11.1 protein.
          Length = 492

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +2

Query: 224 CMYCNHRIFK*LSGKIILERTLNLRRQNNITCCN 325
           C+ CNH++ K ++ +  +E+  N+R   N  CCN
Sbjct: 338 CVLCNHQMPKTVTVQEHMEKEHNIRLVFNCRCCN 371


>AL110479-1|CAB60310.2|  311|Caenorhabditis elegans Hypothetical
           protein Y105C5B.1 protein.
          Length = 311

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = +2

Query: 17  YNQFILLLIM*NLLAKKK--HQGLPIFVTKMITLFFFKIKMEFTLEWTN 157
           Y+ F ++  M N+ A+    +Q +P+F  ++I + FF I M  +  +TN
Sbjct: 212 YHLFKIMKNMENIAARSALLNQFIPVFFVQLIYVLFFVISMLISRMYTN 260


>Z79598-1|CAB01867.3|  586|Caenorhabditis elegans Hypothetical
           protein C44H4.1 protein.
          Length = 586

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 244 PMVTVHTCSSSLSNLIPSPMMYNHYNVSKVSPLQSKL 134
           PM+T    SS+    +PS ++Y+     K SP+Q KL
Sbjct: 369 PMLTSLDLSSNRLESLPSNVIYDSLMQKKTSPVQRKL 405


>Z82261-7|CAH60757.2|  300|Caenorhabditis elegans Hypothetical
           protein C35D6.10 protein.
          Length = 300

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 324 LQHVILFCRRKLSVLSNIIFPLNYLKIRWLQYI 226
           +Q +ILFC    SVLS+++      KIR L Y+
Sbjct: 177 IQAIILFCMAMSSVLSSLLHLSILNKIRKLAYL 209


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,203,399
Number of Sequences: 27780
Number of extensions: 225586
Number of successful extensions: 512
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)