Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304C06f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr 1|...    62   6e-11
SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma...    34   0.015
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...    27   1.7  
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    27   2.2  
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom...    26   3.9  
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom...    25   6.8  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    25   6.8  
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    25   6.8  
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom...    25   6.8  

>SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 137

 Score = 61.7 bits (143), Expect = 6e-11
 Identities = 27/57 (47%), Positives = 38/57 (66%)
 Frame = -2

Query: 511 KQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEKL 341
           + K+  +SW PD A +K KM+YSSS D L+++  G+   IQATD SE + E V EK+
Sbjct: 78  RNKIIFISWSPDVAPIKSKMVYSSSKDTLRRAFTGIGTDIQATDFSEVAYETVLEKV 134


>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 328

 Score = 33.9 bits (74), Expect = 0.015
 Identities = 15/27 (55%), Positives = 21/27 (77%)
 Frame = -2

Query: 517 SKKQKLFLMSWCPDTAKVKKKMLYSSS 437
           SKK  L L+S+ P+ A V++KMLY+SS
Sbjct: 76  SKKNLLQLISYVPENANVRRKMLYASS 102



 Score = 28.7 bits (61), Expect = 0.56
 Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
 Frame = -2

Query: 505 KLFLMSWCPDTAKVKKKMLYSSS----FDALKKSL-VGVQKYIQATDLSEASQEAV 353
           K+  +  CP  A VK +M+YSSS     D++K  L + +   I++ D ++ +++ +
Sbjct: 244 KILFIYICPMQATVKHRMVYSSSKLGLLDSIKAELGIVIDGKIESNDAADITEKEI 299


>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = -2

Query: 439 SFDALKKSLVGVQKYIQATDLSEASQ 362
           S +AL++ L G + Y+Q+TD++  S+
Sbjct: 188 SLEALQEELEGFEDYVQSTDIAAMSK 213


>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +2

Query: 419 LFQSVERAR-VQHLLLDLGGVRAPRHQEELLF 511
           LF   E AR V++LLL L G++A RH +  LF
Sbjct: 460 LFNLFEVAREVKNLLLLLEGLKAQRHNKPKLF 491


>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = -1

Query: 377 LGSVSGGRRREAPRHRSPINSIYTRARDE---TEPALRHSCPDDTRPRHH*PLSIITKEN 207
           LG   G ++ E+ R + P  S    +       EP +RHS     RP+ H   S +T+++
Sbjct: 20  LGEEDGRQKGESSRKKRPPLSRKNPSNVSFWSNEPIIRHSSVKTDRPQFHRADSTVTEQS 79


>SPAC31G5.15 |||phosphatidylserine decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 980

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -3

Query: 120 CREA-VMRFGLKGGAAVVTIWVAHLCC 43
           CR A  +R G+K G  ++ I V  +CC
Sbjct: 7   CRSANTLRKGIKNGKLILKIIVNDVCC 33


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = -1

Query: 344 APRHRSPINSIYTRARDETEPALRHSCPDDTRPRHH*PL 228
           APR R P  ++ T A  E  P  +   P  TR     PL
Sbjct: 24  APRKREPARTVSTPAFMEPAPVSKKPLPPPTRRLPRKPL 62


>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
           Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -1

Query: 329 SPINSIYTRARDETEPALRHSCPDDTRPRHH*PLSIITKEN 207
           SP+++      D ++PAL  S      P+H   LS   KEN
Sbjct: 391 SPLSTPLKAQFDPSKPALNRSIDHQKTPQHKRYLSTEFKEN 431


>SPAC23H3.05c |swd1||COMPASS complex subunit
           Swd1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 16/34 (47%), Positives = 18/34 (52%)
 Frame = +2

Query: 146 YPRGLTRGPTTSKINHINTIRFPL**Y*AASGVV 247
           YP  LT   TT K  H  +IRF    Y  ASG+V
Sbjct: 14  YPEALT---TTLKHGHATSIRFSTNGYHLASGLV 44


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,040,111
Number of Sequences: 5004
Number of extensions: 39375
Number of successful extensions: 109
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)