Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304C06f
         (521 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            26   0.67 
AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript...    25   1.2  
AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein p...    25   1.5  
CR954256-10|CAJ14151.1|  548|Anopheles gambiae putative alkaline...    25   2.0  
AY056833-1|AAL23627.1| 1253|Anopheles gambiae chitin synthase pr...    24   2.7  
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    23   8.2  

>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 26.2 bits (55), Expect = 0.67
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -2

Query: 478 DTAKVKKKMLYSSSFDALK 422
           DTAKV +K+ YSS+F  L+
Sbjct: 257 DTAKVFQKIFYSSAFSKLR 275


>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1222

 Score = 25.4 bits (53), Expect = 1.2
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
 Frame = +3

Query: 69   LQRLPRPSNRNALLL---HGRNRQGAVVPTRADS 161
            LQRL R   R   L    HGRNR+    P+ AD+
Sbjct: 1143 LQRLYRQRAREGTLPTVPHGRNRRSRSAPSEADT 1176


>AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein
            protein.
          Length = 3325

 Score = 25.0 bits (52), Expect = 1.5
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 338  RHRSPINSIYTRARDETEPALRHS 267
            RHRS + +  TR + +TE A+RH+
Sbjct: 1794 RHRSLVTATKTRKKQQTE-AIRHA 1816


>CR954256-10|CAJ14151.1|  548|Anopheles gambiae putative alkaline
           phosphatase protein.
          Length = 548

 Score = 24.6 bits (51), Expect = 2.0
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 368 VSGGRRREAPRHRSPINSIYTRARDETEPALRH 270
           + GGRR   P H + I+ I  R R + E  ++H
Sbjct: 267 MGGGRREFLPTHETDIDGIRGR-RTDGEDLIKH 298



 Score = 23.8 bits (49), Expect = 3.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 389 LDVLLNSDKGLFQSVERARVQH 454
           +D+L  +D G F  VE  R+ H
Sbjct: 361 MDILERNDNGYFLFVEGGRIDH 382


>AY056833-1|AAL23627.1| 1253|Anopheles gambiae chitin synthase
           protein.
          Length = 1253

 Score = 24.2 bits (50), Expect = 2.7
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = -2

Query: 406 VQKYIQATDLSEASQEAVEEKLR 338
           ++KY++  DLSE  +E ++ +L+
Sbjct: 896 IEKYLKPLDLSEKQKEEMKSQLK 918


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
 Frame = +2

Query: 62  HIVTTAAPPFKPKR----ITASRQK*AGGGGTYPRGLTRGPTTS 181
           H+  TA   + P+R    I   R   A GGG+Y      G T S
Sbjct: 160 HLENTAFNAYDPERYGGRIICERTLNASGGGSYKLKNEHGQTVS 203


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 538,180
Number of Sequences: 2352
Number of extensions: 11297
Number of successful extensions: 24
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 47783067
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)