Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304C06f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L18963-1|AAC14457.1| 152|Caenorhabditis elegans unc-60 protein. 48 3e-06
AF024494-2|AAL02463.1| 152|Caenorhabditis elegans Uncoordinated... 48 3e-06
L18963-2|AAC14458.1| 165|Caenorhabditis elegans unc-60 protein. 47 7e-06
AF024494-3|AAL02461.1| 165|Caenorhabditis elegans Uncoordinated... 47 7e-06
AF024494-1|AAL02462.2| 212|Caenorhabditis elegans Uncoordinated... 46 2e-05
Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical pr... 29 2.0
AC025723-3|AAK29935.1| 254|Caenorhabditis elegans Hypothetical ... 29 2.0
Z82257-1|CAB05120.2| 1043|Caenorhabditis elegans Hypothetical pr... 27 6.2
U80450-11|AAM15595.1| 664|Caenorhabditis elegans Temporarily as... 27 6.2
U80450-9|AAK77615.1| 1112|Caenorhabditis elegans Temporarily ass... 27 6.2
U80450-8|AAK77616.1| 949|Caenorhabditis elegans Temporarily ass... 27 6.2
AJ271057-1|CAB65957.1| 1043|Caenorhabditis elegans Ack related n... 27 6.2
AC024801-11|AAN84814.2| 138|Caenorhabditis elegans Hypothetical... 27 8.1
>L18963-1|AAC14457.1| 152|Caenorhabditis elegans unc-60 protein.
Length = 152
Score = 48.4 bits (110), Expect = 3e-06
Identities = 24/66 (36%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Frame = -2
Query: 517 SKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQK--YIQATDLSEASQEAVEEK 344
S K+ + +CPD A V+++MLY+SS ALK SL G++ +QA+++S+ +++V+
Sbjct: 87 STLNKVIFVQYCPDNAPVRRRMLYASSVRALKASL-GLESLFQVQASEMSDLDEKSVKSD 145
Query: 343 LRATDR 326
L + R
Sbjct: 146 LMSNQR 151
>AF024494-2|AAL02463.1| 152|Caenorhabditis elegans Uncoordinated
protein 60, isoform c protein.
Length = 152
Score = 48.4 bits (110), Expect = 3e-06
Identities = 24/66 (36%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Frame = -2
Query: 517 SKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQK--YIQATDLSEASQEAVEEK 344
S K+ + +CPD A V+++MLY+SS ALK SL G++ +QA+++S+ +++V+
Sbjct: 87 STLNKVIFVQYCPDNAPVRRRMLYASSVRALKASL-GLESLFQVQASEMSDLDEKSVKSD 145
Query: 343 LRATDR 326
L + R
Sbjct: 146 LMSNQR 151
>L18963-2|AAC14458.1| 165|Caenorhabditis elegans unc-60 protein.
Length = 165
Score = 47.2 bits (107), Expect = 7e-06
Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Frame = -2
Query: 517 SKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSL-VGVQKYIQATDLSEASQEAVEEKL 341
SK K+ + CPD A +KKKM+Y+SS A+K SL G Q +D SE S + + KL
Sbjct: 99 SKMDKIIFLQICPDGASIKKKMVYASSAAAIKTSLGTGKILQFQVSDESEMSHKELLNKL 158
>AF024494-3|AAL02461.1| 165|Caenorhabditis elegans Uncoordinated
protein 60, isoform a protein.
Length = 165
Score = 47.2 bits (107), Expect = 7e-06
Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Frame = -2
Query: 517 SKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSL-VGVQKYIQATDLSEASQEAVEEKL 341
SK K+ + CPD A +KKKM+Y+SS A+K SL G Q +D SE S + + KL
Sbjct: 99 SKMDKIIFLQICPDGASIKKKMVYASSAAAIKTSLGTGKILQFQVSDESEMSHKELLNKL 158
>AF024494-1|AAL02462.2| 212|Caenorhabditis elegans Uncoordinated
protein 60, isoform b protein.
Length = 212
Score = 45.6 bits (103), Expect = 2e-05
Identities = 23/59 (38%), Positives = 41/59 (69%), Gaps = 2/59 (3%)
Frame = -2
Query: 496 LMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQK--YIQATDLSEASQEAVEEKLRATDR 326
L++ CPD A V+++MLY+SS ALK SL G++ +QA+++S+ +++V+ L + R
Sbjct: 154 LLNNCPDNAPVRRRMLYASSVRALKASL-GLESLFQVQASEMSDLDEKSVKSDLMSNQR 211
Score = 44.8 bits (101), Expect = 4e-05
Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = -2
Query: 517 SKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSL-VGVQKYIQATDLSEASQE 359
SK K+ + CPD A +KKKM+Y+SS A+K SL G Q +D SE S +
Sbjct: 99 SKMDKIIFLQICPDGASIKKKMVYASSAAAIKTSLGTGKILQFQVSDESEMSHK 152
>Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical protein
F32H2.5 protein.
Length = 2586
Score = 29.1 bits (62), Expect = 2.0
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +2
Query: 368 RFREVGRLDVLLNSDKGLFQSVERARVQHLLLD 466
RF E+G++D+ NS G+ + ++ V +LLD
Sbjct: 1828 RFLEIGKVDLSQNSSLGMAKLLDNVSVHGILLD 1860
>AC025723-3|AAK29935.1| 254|Caenorhabditis elegans Hypothetical
protein Y54F10AM.6 protein.
Length = 254
Score = 29.1 bits (62), Expect = 2.0
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 257 RQGRSVGERVRFRRELVCKCC 319
R+GR G+ ++FR E VC+CC
Sbjct: 196 RKGR--GKNIKFRTEKVCRCC 214
>Z82257-1|CAB05120.2| 1043|Caenorhabditis elegans Hypothetical
protein C01C7.1 protein.
Length = 1043
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -1
Query: 377 LGSVSGGRRREAPRHRSPINSIYTRARDETEPA 279
L ++S R+ P R P+ ++Y R +D PA
Sbjct: 688 LTALSSSRKDPIPAPRGPVAAVYARGKDIPTPA 720
>U80450-11|AAM15595.1| 664|Caenorhabditis elegans Temporarily
assigned gene nameprotein 163, isoform d protein.
Length = 664
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 328 DRWRGASLRRPPETLPRGRSLGCTSELRQGT 420
+RWRG +PP PR S + L +GT
Sbjct: 435 ERWRGRMRGKPPTPPPRESSASPVNSLPRGT 465
>U80450-9|AAK77615.1| 1112|Caenorhabditis elegans Temporarily
assigned gene nameprotein 163, isoform a protein.
Length = 1112
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 328 DRWRGASLRRPPETLPRGRSLGCTSELRQGT 420
+RWRG +PP PR S + L +GT
Sbjct: 435 ERWRGRMRGKPPTPPPRESSASPVNSLPRGT 465
>U80450-8|AAK77616.1| 949|Caenorhabditis elegans Temporarily
assigned gene nameprotein 163, isoform c protein.
Length = 949
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 328 DRWRGASLRRPPETLPRGRSLGCTSELRQGT 420
+RWRG +PP PR S + L +GT
Sbjct: 435 ERWRGRMRGKPPTPPPRESSASPVNSLPRGT 465
>AJ271057-1|CAB65957.1| 1043|Caenorhabditis elegans Ack related
non-receptor tyrosinekinase protein.
Length = 1043
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -1
Query: 377 LGSVSGGRRREAPRHRSPINSIYTRARDETEPA 279
L ++S R+ P R P+ ++Y R +D PA
Sbjct: 688 LTALSSSRKDPIPAPRGPVAAVYARGKDIPTPA 720
>AC024801-11|AAN84814.2| 138|Caenorhabditis elegans Hypothetical
protein Y50D7A.10 protein.
Length = 138
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = -2
Query: 502 LFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEK 344
+ L+ +CP+ + + +MLY+ S + + V K + D+ E E +E K
Sbjct: 86 MLLIYYCPNGSSPELQMLYAGSRNFIVNE-CHVSKNTEIRDIDEIDDELLESK 137
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,746,055
Number of Sequences: 27780
Number of extensions: 241277
Number of successful extensions: 725
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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