Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304C06f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g59890.2 68418.m07511 actin-depolymerizing factor 4 (ADF4) id... 63 1e-10
At5g59890.1 68418.m07510 actin-depolymerizing factor 4 (ADF4) id... 63 1e-10
At4g00680.1 68417.m00093 actin-depolymerizing factor, putative s... 62 2e-10
At1g01750.1 68414.m00094 actin-depolymerizing factor, putative s... 62 3e-10
At3g46010.1 68416.m04978 actin-depolymerizing factor 1 (ADF1) id... 61 5e-10
At3g46000.1 68416.m04977 actin-depolymerizing factor, putative (... 59 2e-09
At5g52360.1 68418.m06497 actin-depolymerizing factor, putative s... 59 2e-09
At4g25590.1 68417.m03687 actin-depolymerizing factor, putative s... 58 3e-09
At3g45990.1 68416.m04976 actin-depolymerizing factor, putative s... 57 6e-09
At5g59880.1 68418.m07508 actin-depolymerizing factor 3 (ADF3) id... 56 2e-08
At2g31200.1 68415.m03810 actin-depolymerizing factor 6 (ADF6) id... 54 6e-08
At2g16700.1 68415.m01916 actin-depolymerizing factor 5 (ADF5) id... 53 1e-07
At4g34970.1 68417.m04957 actin-depolymerizing factor, putative s... 49 2e-06
At5g63320.1 68418.m07946 expressed protein 31 0.36
At5g43930.1 68418.m05374 transducin family protein / WD-40 repea... 29 2.5
At3g01560.1 68416.m00086 proline-rich family protein contains pr... 29 2.5
At1g34360.1 68414.m04266 translation initiation factor 3 (IF-3) ... 28 4.4
At5g28810.1 68418.m03542 hypothetical protein 27 5.8
At4g25540.1 68417.m03682 DNA mismatch repair protein MSH3 (MSH3)... 27 5.8
At1g64430.1 68414.m07302 expressed protein 27 5.8
>At5g59890.2 68418.m07511 actin-depolymerizing factor 4 (ADF4)
identical to SP|Q9ZSK3 Actin-depolymerizing factor 4
(ADF-4) (AtADF4) {Arabidopsis thaliana}
Length = 132
Score = 62.9 bits (146), Expect = 1e-10
Identities = 25/58 (43%), Positives = 41/58 (70%)
Frame = -2
Query: 514 KKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEKL 341
+K K+F ++WCPD AKV+ KM+Y+SS D K+ L G+Q +QATD +E + ++ ++
Sbjct: 74 QKSKIFFIAWCPDVAKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVLKSRV 131
>At5g59890.1 68418.m07510 actin-depolymerizing factor 4 (ADF4)
identical to SP|Q9ZSK3 Actin-depolymerizing factor 4
(ADF-4) (AtADF4) {Arabidopsis thaliana}
Length = 139
Score = 62.9 bits (146), Expect = 1e-10
Identities = 25/58 (43%), Positives = 41/58 (70%)
Frame = -2
Query: 514 KKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEKL 341
+K K+F ++WCPD AKV+ KM+Y+SS D K+ L G+Q +QATD +E + ++ ++
Sbjct: 81 QKSKIFFIAWCPDVAKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVLKSRV 138
>At4g00680.1 68417.m00093 actin-depolymerizing factor, putative
strong similarity to SP|P30175 Actin-depolymerizing
factor (ADF) {Lilium longiflorum}; contains Pfam profile
PF00241: Cofilin/tropomyosin-type actin-binding protein
Length = 140
Score = 62.5 bits (145), Expect = 2e-10
Identities = 26/58 (44%), Positives = 42/58 (72%)
Frame = -2
Query: 514 KKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEKL 341
+K K+F ++W PDT++V+ KMLY+SS D K+ + G+Q +QATD SE S + ++ +L
Sbjct: 81 QKSKIFFIAWSPDTSRVRSKMLYASSKDRFKREMEGIQVELQATDPSEMSLDIIKGRL 138
>At1g01750.1 68414.m00094 actin-depolymerizing factor, putative
strong similarity to SP|P30175 Actin-depolymerizing
factor (ADF) {Lilium longiflorum}; contains Pfam profile
PF00241: Cofilin/tropomyosin-type actin-binding protein
Length = 140
Score = 61.7 bits (143), Expect = 3e-10
Identities = 26/58 (44%), Positives = 42/58 (72%)
Frame = -2
Query: 514 KKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEKL 341
+K K+F ++W PDT++V+ KMLY+SS D K+ L G+Q +QATD SE S + ++ ++
Sbjct: 81 QKSKIFFIAWSPDTSRVRSKMLYASSKDRFKRELDGIQVELQATDPSEMSLDIIKGRV 138
>At3g46010.1 68416.m04978 actin-depolymerizing factor 1 (ADF1)
identical to SP|Q39250 Actin-depolymerizing factor 1
(ADF-1) (AtADF1) {Arabidopsis thaliana}
Length = 139
Score = 60.9 bits (141), Expect = 5e-10
Identities = 25/48 (52%), Positives = 36/48 (75%)
Frame = -2
Query: 514 KKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSE 371
+K K+F ++WCPD AKV+ KM+Y+SS D K+ L G+Q +QATD +E
Sbjct: 81 QKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVELQATDPTE 128
>At3g46000.1 68416.m04977 actin-depolymerizing factor, putative
(ADF2) strong similarity to SP|Q9ZSK3
Actin-depolymerizing factor 4 (ADF-4) (AtADF4)
{Arabidopsis thaliana}; contains Pfam profile PF00241:
Cofilin/tropomyosin-type actin-binding protein
Length = 137
Score = 59.3 bits (137), Expect = 2e-09
Identities = 25/57 (43%), Positives = 39/57 (68%)
Frame = -2
Query: 514 KKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEK 344
+K K+F ++W PDTAKV+ KM+Y+SS D K+ L G+Q +QATD +E + + +
Sbjct: 79 QKSKIFFIAWSPDTAKVRDKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVFKSR 135
>At5g52360.1 68418.m06497 actin-depolymerizing factor, putative
strong similarity to pollen specific
actin-depolymerizing factor 2 [Nicotiana tabacum]
GI:22857914; contains Pfam profile PF00241:
Cofilin/tropomyosin-type actin-binding protein
Length = 137
Score = 58.8 bits (136), Expect = 2e-09
Identities = 24/57 (42%), Positives = 41/57 (71%)
Frame = -2
Query: 514 KKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEK 344
+K K+F ++W PD+++V+ KM+Y+SS D K+ L G+Q +QATD SE S + ++ +
Sbjct: 79 QKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGIQVELQATDPSEMSLDIIKSR 135
>At4g25590.1 68417.m03687 actin-depolymerizing factor, putative
strong similarity to pollen specific
actin-depolymerizing factor 2 [Nicotiana tabacum]
GI:22857914; contains Pfam profile PF00241:
Cofilin/tropomyosin-type actin-binding protein
Length = 130
Score = 58.4 bits (135), Expect = 3e-09
Identities = 24/57 (42%), Positives = 41/57 (71%)
Frame = -2
Query: 514 KKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEK 344
+K K+F ++W PD+++V+ KM+Y+SS D K+ L G+Q +QATD SE S + ++ +
Sbjct: 72 QKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGIQVELQATDPSEMSFDIIKSR 128
>At3g45990.1 68416.m04976 actin-depolymerizing factor, putative
similar to SP|Q9ZSK3 Actin-depolymerizing factor 4
(ADF-4) (AtADF4) {Arabidopsis thaliana}; contains Pfam
profile PF00241: Cofilin/tropomyosin-type actin-binding
protein
Length = 133
Score = 57.2 bits (132), Expect = 6e-09
Identities = 23/57 (40%), Positives = 40/57 (70%)
Frame = -2
Query: 511 KQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEKL 341
++K+ ++W P TAK++KKM+YSS+ D K+ L G+Q ATDL++ S +A+ ++
Sbjct: 76 ERKICFIAWSPSTAKMRKKMIYSSTKDRFKRELDGIQVEFHATDLTDISLDAIRRRI 132
>At5g59880.1 68418.m07508 actin-depolymerizing factor 3 (ADF3)
identical to SP|Q9ZSK4 Actin-depolymerizing factor 3
(ADF 3) (AtADF3) {Arabidopsis thaliana}
Length = 139
Score = 55.6 bits (128), Expect = 2e-08
Identities = 22/56 (39%), Positives = 38/56 (67%)
Frame = -2
Query: 511 KQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEK 344
+ ++F ++W PDTA+V+ KM+Y+SS D K+ L G+Q +QATD +E + + +
Sbjct: 82 RSRIFFVAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVFKSR 137
>At2g31200.1 68415.m03810 actin-depolymerizing factor 6 (ADF6)
identical to SP|Q9ZSK2 Actin-depolymerizing factor 6
(ADF-6) (AtADF6) {Arabidopsis thaliana}
Length = 146
Score = 54.0 bits (124), Expect = 6e-08
Identities = 23/57 (40%), Positives = 36/57 (63%)
Frame = -2
Query: 514 KKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEK 344
+K K+F +W P T+ ++ K+LYS+S D L + L G+ IQATD +E E + E+
Sbjct: 88 QKSKIFFFAWSPSTSGIRAKVLYSTSKDQLSRELQGIHYEIQATDPTEVDLEVLRER 144
>At2g16700.1 68415.m01916 actin-depolymerizing factor 5 (ADF5)
identical to SP|Q9ZNT3 Actin-depolymerizing factor 5
(ADF-5) (AtADF5) {Arabidopsis thaliana}
Length = 143
Score = 53.2 bits (122), Expect = 1e-07
Identities = 19/59 (32%), Positives = 41/59 (69%)
Frame = -2
Query: 514 KKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEKLR 338
+K K+F ++W P+ +K++ K+LY++S D L++ L G+ +QATD +E + ++++ +
Sbjct: 85 RKSKIFFIAWSPEASKIRAKILYATSKDGLRRVLEGIHYELQATDPTEMGFDIIQDRAK 143
>At4g34970.1 68417.m04957 actin-depolymerizing factor, putative
similar to SP|Q9ZNT3 Actin-depolymerizing factor 5
(ADF-5) (AtADF5) {Arabidopsis thaliana}; contains Pfam
profile PF00241: Cofilin/tropomyosin-type actin-binding
protein
Length = 130
Score = 48.8 bits (111), Expect = 2e-06
Identities = 17/59 (28%), Positives = 40/59 (67%)
Frame = -2
Query: 514 KKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEKLR 338
+ K+F ++W P+ +++++KM+Y++S L++ L GV +QATD +E + ++++ +
Sbjct: 72 RMSKIFFITWSPEASRIREKMMYATSKSGLRRVLDGVHYELQATDPTEMGFDKIQDRAK 130
>At5g63320.1 68418.m07946 expressed protein
Length = 569
Score = 31.5 bits (68), Expect = 0.36
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = -1
Query: 479 GHRQGQEEDVVL*LVRRSEKVPCRSSEVHPSDRPLGSVSGGRR--REAPRHRSPINSIYT 306
G ++ QE +VV + +E V EVHP DR G R RE PR S+
Sbjct: 311 GDKEEQETEVVDMRKQENEVVDMGVEEVHPLDRSEGRTLSPHRKEREDPRASGNEESVSE 370
Query: 305 RARD 294
+A+D
Sbjct: 371 KAQD 374
>At5g43930.1 68418.m05374 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to WD-repeat protein 5 (SP:Q9UGP9) [Homo
sapiens]
Length = 726
Score = 28.7 bits (61), Expect = 2.5
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -1
Query: 380 PLGSVSGGRRREAPRHRSPINSIYTRARDETEPALRHSCPDDTRP 246
PL + SG + SP N TRA D T PA+ D+ +P
Sbjct: 307 PLATSSGPSGPNSVPGNSPSNIFLTRAGDRTSPAVDGMDVDEAQP 351
>At3g01560.1 68416.m00086 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 511
Score = 28.7 bits (61), Expect = 2.5
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 128 AGGGGTYPRGLTRGPTTSKINHINTIRFP 214
+GGG + PR +R P I+ + T+ FP
Sbjct: 441 SGGGSSSPRSESRAPIDDVIDRVTTMGFP 469
>At1g34360.1 68414.m04266 translation initiation factor 3 (IF-3)
family protein low similarity to Translation initiation
factor IF-3 from [subsp. Schizaphis graminum] {Buchnera
aphidicola} SP|P46243, {Salmonella typhimurium}
SP|P33321; contains Pfam profiles PF05198: Translation
initiation factor IF-3 N-terminal domain, PF00707:
Translation initiation factor IF-3 C-terminal domain
Length = 520
Score = 27.9 bits (59), Expect = 4.4
Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Frame = +3
Query: 36 DIYNIN-VPPI*LQRLPRPSNRNALLLHGRNRQGAVVPTRADSQEVLPPVKSIILILFVF 212
DI I P I + L S++ L+ R + D + L P K ++ +LF F
Sbjct: 165 DIKEIRFTPKIEAKDLKFKSDQALKLMESGYRVKCLAVPDKDKHKELEPEK-LLELLFRF 223
Query: 213 LCNNTKRLVVSWPRVVRAG 269
C LV SWP R G
Sbjct: 224 TCFIGDALVESWPEADRKG 242
>At5g28810.1 68418.m03542 hypothetical protein
Length = 560
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +3
Query: 267 GVSES-GFGFVASSCVNAVYWRSVARSFSSTA 359
G+ E+ GFG +CV + WRS + F+ TA
Sbjct: 185 GIGEACGFGKTTLTCVPLLDWRSSRKRFNFTA 216
>At4g25540.1 68417.m03682 DNA mismatch repair protein MSH3 (MSH3)
identical to SP|O65607 DNA mismatch repair protein MSH3
(AtMsh3) {Arabidopsis thaliana}
Length = 1081
Score = 27.5 bits (58), Expect = 5.8
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = +3
Query: 177 PVKSIILILFVFLCNNTKRLVVSWPRVVRAGVSESGFGFVASSCVNAVYWRSVARSFS 350
PV S + + +V + N+TK+ + P + AG+ E + VN W S +SFS
Sbjct: 679 PVDSKVPMNWVKV-NSTKKTIRYHPPEIVAGLDELALATEHLAIVNRASWDSFLKSFS 735
>At1g64430.1 68414.m07302 expressed protein
Length = 559
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 254 CRQGRSVGERVRFRRELVCKCCLLAIGGAE 343
CR G S E V F + + C CL+AI A+
Sbjct: 180 CRVGISPAEEVPFGKIVRCPSCLIAIAVAQ 209
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,287,742
Number of Sequences: 28952
Number of extensions: 234453
Number of successful extensions: 718
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -