Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304C05f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy...    45   6e-06
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb...    34   0.011
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    31   0.14 
SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr 1|||M...    30   0.24 
SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc...    26   3.0  
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2...    26   3.0  
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    26   3.9  
SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom...    25   6.8  
SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces pombe...    25   6.8  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    25   6.8  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    25   6.8  
SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces po...    25   6.8  
SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces pomb...    25   6.8  
SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   9.0  
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po...    25   9.0  
SPAC8F11.06 |||nuclear envelope protein |Schizosaccharomyces pom...    25   9.0  
SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|...    25   9.0  

>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 656

 Score = 45.2 bits (102), Expect = 6e-06
 Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
 Frame = +2

Query: 305 KLDTP--TSNMDTLTHLLKASLGTGILAMPKAFKAAGLINGILFTVIVAVVCTHCSYILV 478
           KL TP   SN   +  LLK+ +GTG+L +PKAFK  GL+      +IV V+   C  +L+
Sbjct: 268 KLQTPGNASNGKAVLLLLKSFVGTGVLFLPKAFKLGGLVFSSATLLIVGVLSHICFLLLI 327

Query: 479 K 481
           +
Sbjct: 328 Q 328


>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 34.3 bits (75), Expect = 0.011
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = +2

Query: 335 TLTHLLKASLGTGILAMPKAFKAAGLINGILFTVIVAVVCTHCSYILVKCAHXL 496
           ++ +L    LG GIL++P AF   GL+ G L  V  A       Y + +CA  L
Sbjct: 24  SVINLANTILGAGILSLPNAFTKTGLLFGCLTIVFSAFASFLGLYFVSQCAARL 77


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 30.7 bits (66), Expect = 0.14
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -3

Query: 342 VRVSIFEVGVSNFLSVNGSKSPDSASFVMLYLLTIFSLFFSSGD 211
           ++V+ F VGVSN   VNG     S SF   + +T   L++  G+
Sbjct: 828 IKVNTFSVGVSNSRFVNGQFRVSSISFCFTHAVTEKVLYYYYGN 871


>SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 274

 Score = 29.9 bits (64), Expect = 0.24
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +2

Query: 194 ELETFISPDEKNKEKIVSKY-NMTKDAESGDFDPFTERKLD 313
           E+E    P E+NK++I  K  N+  D E+   +P+T+ K D
Sbjct: 119 EIEVDAEPKEENKKEIPEKLKNVKVDTENPSAEPYTKAKGD 159


>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
           Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 164 ESNGAIP-APQELETFISPDEKNKEKIVSKYNMTKDAE 274
           E+  A P  PQE+   +S  ++  ++ V KY  TKD E
Sbjct: 274 EAKSAAPDEPQEIIKSVSGGKRRGKRKVKKYATTKDEE 311


>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 479

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = +2

Query: 185 APQELETFISPDEKNKEKIVSKYNMTKDAESGDFDPFTERKLDTPTSN 328
           APQ L  F +PD +    I       K  E+ + D   E  L T +SN
Sbjct: 155 APQRLSDFFTPDGRRVSNIRDSLISEKRLEN-NIDQVQESALSTASSN 201


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = +2

Query: 98  TDK*PNLRFTGKSIDQRCKMVNESNGAIPAPQELETFISPDEKNKEKIVSKYNMTKD 268
           TDK   L F  +      +       AIP P E++   + DEK+ + +  +  +T D
Sbjct: 822 TDKSSPLLFLAEQAASASEAAAPDLAAIPIPNEVDDAEAADEKDGKLVEEEQRVTGD 878


>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 342 VRVSIFEVGVSNFLSVNGSKSPDSA 268
           +R S+ +  VSNFLS+N S +   A
Sbjct: 18  LRQSLLKTSVSNFLSLNASSTMSRA 42


>SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +2

Query: 125 TGKSIDQRCKMVNE--SNGAIPAPQELETFISPDEKN 229
           T +++D+    + E  S  ++ A   +E FISP E+N
Sbjct: 400 TSRALDEMIHPLRELVSEFSVQAAMRIEDFISPSEEN 436


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = +2

Query: 131  KSIDQRCKMVNESNGAIPAPQELETFISPDEKNKEKIVS--KYNMTKDAESGDFDPFTER 304
            K +DQ  + +NE    +   Q +E     D+ N+EK     K  MT+   + D     ++
Sbjct: 1089 KRVDQLEEALNEKLARLVGEQMVEGDKEKDKTNEEKNKDEVKAEMTQPVVNQDSHDLQDQ 1148

Query: 305  KLDTPTS 325
               TPT+
Sbjct: 1149 LATTPTA 1155


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = +2

Query: 131  KSIDQRCKMVNESNGAIPAPQELETFISPDEKNKEKIVS--KYNMTKDAESGDFDPFTER 304
            K +DQ  + +NE    +   Q +E     D+ N+EK     K  MT+   + D     ++
Sbjct: 1089 KRVDQLEEALNEKLARLVGEQMVEGDKEKDKTNEEKNKDEVKAEMTQPVVNQDSHDLQDQ 1148

Query: 305  KLDTPTS 325
               TPT+
Sbjct: 1149 LATTPTA 1155


>SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 261

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 17/66 (25%), Positives = 26/66 (39%)
 Frame = +2

Query: 290 PFTERKLDTPTSNMDTLTHLLKASLGTGILAMPKAFKAAGLINGILFTVIVAVVCTHCSY 469
           PF    LD+P    + + ++   S+      M K FK  G  N I    + A +     +
Sbjct: 109 PFRRSVLDSPPHEFEKVMNINTNSVYRVAYYMGKIFKKQGFGNLIATASMSATIVNAPQH 168

Query: 470 ILVKCA 487
           I   CA
Sbjct: 169 IAAYCA 174


>SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 376

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
 Frame = +2

Query: 254 NMTKDAESGDFDPFTERKLDTPTSNM-------DTLTHLLKASLGTGILAMPKAFKAAGL 412
           N   +A +  +  F  +K++  T N        D   +++KAS  +G L M +A   AGL
Sbjct: 98  NTASEAIAQSYPKFLSKKINIATPNKKAFSASNDVYQNIIKASKESGALLMHEASVGAGL 157


>SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 15/63 (23%), Positives = 28/63 (44%)
 Frame = +2

Query: 167 SNGAIPAPQELETFISPDEKNKEKIVSKYNMTKDAESGDFDPFTERKLDTPTSNMDTLTH 346
           +N  +PA ++LE+FIS +    +          D+   D        +    SN++ L +
Sbjct: 174 TNSDLPASKQLESFISMNLSYSKVFFLHLLQHSDSSFNDKFLLLLANIPVTVSNVEVLLY 233

Query: 347 LLK 355
           LL+
Sbjct: 234 LLQ 236


>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 207 LYLRMKRTKKRLLANIT*RKMRSQET-LIRSPKGSWT 314
           LY+ + R KKRL+ N T  K+ + E  L+R   G  T
Sbjct: 760 LYVALTRAKKRLILNDTITKLYALECGLVRFAGGILT 796


>SPAC8F11.06 |||nuclear envelope protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 297

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = +2

Query: 188 PQELETFISPDEKNKEKIVSKYNMTKDAESGDFDPFTER 304
           P+ ++  +SPDEKN +K   +  + K   +   +  + R
Sbjct: 42  PEPMDISMSPDEKNLKKSTVRRKLRKSKPNSSSNQVSSR 80


>SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 403

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 122 FTGKSIDQRCKMVNESNGAIPAPQELETFISPD 220
           F+  +++   K V+E+N  IP+   L + ISP+
Sbjct: 108 FSWSTVNNPTKPVDETNATIPSSLLLSSGISPN 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,276,421
Number of Sequences: 5004
Number of extensions: 48461
Number of successful extensions: 161
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)