Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304C05f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31490| Best HMM Match : Aa_trans (HMM E-Value=4.9e-31) 55 3e-08
SB_15337| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 2e-05
SB_54782| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 5e-04
SB_42788| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.012
SB_36054| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.012
SB_27864| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.015
SB_48198| Best HMM Match : Aa_trans (HMM E-Value=0.0018) 36 0.020
SB_46723| Best HMM Match : Sm_multidrug_ex (HMM E-Value=1.4) 36 0.020
SB_40988| Best HMM Match : Sm_multidrug_ex (HMM E-Value=1.4) 36 0.020
SB_27407| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.020
SB_27382| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.020
SB_58279| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.082
SB_58414| Best HMM Match : Aa_trans (HMM E-Value=3.1e-35) 34 0.082
SB_42789| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.19
SB_45928| Best HMM Match : Uso1_p115_C (HMM E-Value=0.54) 32 0.25
SB_36678| Best HMM Match : Aa_trans (HMM E-Value=1.8e-07) 32 0.25
SB_43964| Best HMM Match : Aa_trans (HMM E-Value=9.2e-05) 32 0.33
SB_49462| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.44
SB_32453| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.44
SB_17613| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.58
SB_54489| Best HMM Match : Aa_trans (HMM E-Value=0.02) 31 0.76
SB_51521| Best HMM Match : DNA_binding_1 (HMM E-Value=1.1e-32) 29 2.3
SB_43808| Best HMM Match : DNA_binding_1 (HMM E-Value=1.1e-32) 29 2.3
SB_43806| Best HMM Match : DNA_binding_1 (HMM E-Value=1.9e-31) 29 2.3
SB_33236| Best HMM Match : DNA_binding_1 (HMM E-Value=1.1e-32) 29 2.3
SB_41425| Best HMM Match : DCX (HMM E-Value=8.6e-06) 29 2.3
SB_31406| Best HMM Match : DNA_binding_1 (HMM E-Value=1.9e-31) 29 2.3
SB_19363| Best HMM Match : Neuromodulin (HMM E-Value=1.4) 29 3.1
SB_19426| Best HMM Match : Calx-beta (HMM E-Value=3e-06) 28 4.1
SB_37482| Best HMM Match : WD40 (HMM E-Value=1.1e-05) 28 5.4
SB_19709| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_12363| Best HMM Match : Lig_chan (HMM E-Value=2.5e-34) 28 5.4
SB_5433| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_21463| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_28252| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_31490| Best HMM Match : Aa_trans (HMM E-Value=4.9e-31)
Length = 974
Score = 55.2 bits (127), Expect = 3e-08
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Frame = +2
Query: 248 KYNMTKDAESGDFDPFTERKLDTPTS--NMDTLTHLLKASLGTGILAMPKAFKAAGLING 421
K N TK + + K PT+ ++LKA +GT LA+P AFK +GL G
Sbjct: 357 KENYTKSGDDRKTHTLSPHKCLRPTAWQQFTDFANVLKAFIGTSYLALPFAFKQSGLALG 416
Query: 422 ILFTVIVAVVCTHCSYILVKC 484
I+ V++A + HC +++KC
Sbjct: 417 IVALVLIATITDHCCQMIIKC 437
>SB_15337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 366
Score = 46.0 bits (104), Expect = 2e-05
Identities = 24/74 (32%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Frame = +2
Query: 203 TFISPDEKNKEK-IVSKYNMTKDAESGDFDPFTERKLD--TPTSNMDTLTHLLKASLGTG 373
+ I+ E +K + + + +++ +A++G +R L PTS TLTH+LKA++G G
Sbjct: 31 SLINDSENDKRRYLAAGGSLSLNADAGGSLSIIDRTLHLKNPTSEWQTLTHILKANIGPG 90
Query: 374 ILAMPKAFKAAGLI 415
+L++P A AG++
Sbjct: 91 MLSLPAAMMNAGIV 104
>SB_54782| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 41.1 bits (92), Expect = 5e-04
Identities = 19/62 (30%), Positives = 33/62 (53%)
Frame = +2
Query: 305 KLDTPTSNMDTLTHLLKASLGTGILAMPKAFKAAGLINGILFTVIVAVVCTHCSYILVKC 484
K + T + ++ A++GTGILAMP + G G+ ++VA++ + IL+ C
Sbjct: 21 KEENETHSFQAFFNIFNANMGTGILAMPYVIRLTGYW-GVAIVILVALLGNYTGKILIHC 79
Query: 485 AH 490
H
Sbjct: 80 LH 81
>SB_42788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 617
Score = 36.7 bits (81), Expect = 0.012
Identities = 21/51 (41%), Positives = 30/51 (58%)
Frame = +2
Query: 365 GTGILAMPKAFKAAGLINGILFTVIVAVVCTHCSYILVKCAHXLYKKTKKT 517
GTGIL +P A + G G+ V+VA VC +LV C LY+++K+T
Sbjct: 125 GTGILGVPYAVRMGGWA-GVAAIVVVAWVCCFTGKLLVDC---LYEESKRT 171
>SB_36054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1267
Score = 36.7 bits (81), Expect = 0.012
Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Frame = +2
Query: 218 DEKNKEKIVSKYNMTKDAESGDFDPFTERKLDTPTSNMDTLTHLLKASLGTGILAMPKAF 397
+E N+++ + N KD E D + T T + ++T+ ++ GTG LA+P A
Sbjct: 851 NENNQQEKANDSN--KDREERDANDGTN---STWRATLNTINYME----GTGFLALPYAV 901
Query: 398 KAAGLINGILFTVIVAVVCTHCSYILVKCAHXLYK-KTKK 514
G I G L ++V ++ + +YI V CA+ K K KK
Sbjct: 902 SRGG-IAGALGFILVPIILAYTAYISVDCAYEGGKYKAKK 940
>SB_27864| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 116
Score = 36.3 bits (80), Expect = 0.015
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = +2
Query: 365 GTGILAMPKAFKAAGLINGILFTVIVAVVCTHCSYILVKCAHXLYKKTKK 514
GTG LA+P A GL + F V ++ + SY+L++C + K TK+
Sbjct: 49 GTGFLALPYAVSRGGLAGALSF-AFVGILMAYTSYLLIECVYE-GKSTKR 96
>SB_48198| Best HMM Match : Aa_trans (HMM E-Value=0.0018)
Length = 288
Score = 35.9 bits (79), Expect = 0.020
Identities = 28/90 (31%), Positives = 42/90 (46%)
Frame = +2
Query: 245 SKYNMTKDAESGDFDPFTERKLDTPTSNMDTLTHLLKASLGTGILAMPKAFKAAGLINGI 424
S YN E GD + E+ S +L+ GTG+L +P A + G+I +
Sbjct: 36 SDYNPGVTDEEGDEESDAEKG---GCSLWHAFWNLVNVIEGTGVLGLPYAVREGGII-VV 91
Query: 425 LFTVIVAVVCTHCSYILVKCAHXLYKKTKK 514
L +I+AV+ + IL+ C LY K K
Sbjct: 92 LGLIILAVISNYTGQILIGC---LYTKDPK 118
>SB_46723| Best HMM Match : Sm_multidrug_ex (HMM E-Value=1.4)
Length = 163
Score = 35.9 bits (79), Expect = 0.020
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = +2
Query: 365 GTGILAMPKAFKAAGLINGILFTVIVAVVCTHCSYILVKCAHXLYKKTKK 514
GTG LA+P A GL + F V ++ + SY+L++C + K TK+
Sbjct: 34 GTGFLALPYAVARGGLAGALSF-AFVGILMAYTSYLLIECVYE-GKSTKR 81
>SB_40988| Best HMM Match : Sm_multidrug_ex (HMM E-Value=1.4)
Length = 178
Score = 35.9 bits (79), Expect = 0.020
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = +2
Query: 365 GTGILAMPKAFKAAGLINGILFTVIVAVVCTHCSYILVKCAHXLYKKTKK 514
GTG LA+P A GL + F V ++ + SY+L++C + K TK+
Sbjct: 49 GTGFLALPYAVARGGLAGALSF-AFVGILMAYTSYLLIECVYE-GKSTKR 96
>SB_27407| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 117
Score = 35.9 bits (79), Expect = 0.020
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = +2
Query: 365 GTGILAMPKAFKAAGLINGILFTVIVAVVCTHCSYILVKCAHXLYKKTKK 514
GTG LA+P A GL + F V ++ + SY+L++C + K TK+
Sbjct: 49 GTGFLALPYAVARGGLAGALSF-AFVGILMAYTSYLLIECVYE-GKSTKR 96
>SB_27382| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 381
Score = 35.9 bits (79), Expect = 0.020
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = +2
Query: 365 GTGILAMPKAFKAAGLINGILFTVIVAVVCTHCSYILVKCAHXLYKKTKK 514
GTG LA+P A GL + F V ++ + SY+L++C + K TK+
Sbjct: 3 GTGFLALPYAVARGGLAGALSF-AFVGILMAYTSYLLIECVYE-GKSTKR 50
>SB_58279| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 744
Score = 33.9 bits (74), Expect = 0.082
Identities = 12/50 (24%), Positives = 28/50 (56%)
Frame = +2
Query: 329 MDTLTHLLKASLGTGILAMPKAFKAAGLINGILFTVIVAVVCTHCSYILV 478
+ ++ L+ +G G+L++P AF+ G + L + V + TH ++++
Sbjct: 233 LSSIFTLVSTMIGGGVLSLPFAFQQGGFVMSSLVLIFVLMASTHGGFLII 282
>SB_58414| Best HMM Match : Aa_trans (HMM E-Value=3.1e-35)
Length = 436
Score = 33.9 bits (74), Expect = 0.082
Identities = 19/68 (27%), Positives = 35/68 (51%)
Frame = +2
Query: 311 DTPTSNMDTLTHLLKASLGTGILAMPKAFKAAGLINGILFTVIVAVVCTHCSYILVKCAH 490
D TS + + G+G +A+P A GL G L ++V ++ T+ ++I+V C +
Sbjct: 40 DGTTSTWRATLNTINYMEGSGFVALPYAVARGGLA-GALGFILVPIIFTYTAHIMVDCLY 98
Query: 491 XLYKKTKK 514
+ T+K
Sbjct: 99 EGGRYTEK 106
>SB_42789| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 507
Score = 32.7 bits (71), Expect = 0.19
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +2
Query: 365 GTGILAMPKAFKAAGLINGILFTVIVAVVCTHCSYILVKCAHXLYKKTKK 514
G GIL +P A + G+ + V VA+VC +LV C + + +++K
Sbjct: 117 GMGILGIPYAVREGGIAAAVCIFV-VAIVCDVTGILLVDCLYEISPRSQK 165
>SB_45928| Best HMM Match : Uso1_p115_C (HMM E-Value=0.54)
Length = 500
Score = 32.3 bits (70), Expect = 0.25
Identities = 20/52 (38%), Positives = 30/52 (57%)
Frame = +2
Query: 155 MVNESNGAIPAPQELETFISPDEKNKEKIVSKYNMTKDAESGDFDPFTERKL 310
+V ESN IP QE +EK+ + I+SK ++TK+AE + P + KL
Sbjct: 32 LVKESNQNIPETQEARG-AEGNEKD-DPIISKASLTKEAEKAEAKPEPKSKL 81
>SB_36678| Best HMM Match : Aa_trans (HMM E-Value=1.8e-07)
Length = 956
Score = 32.3 bits (70), Expect = 0.25
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +2
Query: 347 LLKASLGTGILAMPKAF-KAAGLINGILFTVIVAVVCTHCSYILVKCAH 490
++ A++G GIL P+AF KA G+ + +++ V T I+ CA+
Sbjct: 317 VMNAAMGAGILNFPQAFGKAGGITAAMSIELVMLVFITGSFVIMAYCAN 365
>SB_43964| Best HMM Match : Aa_trans (HMM E-Value=9.2e-05)
Length = 332
Score = 31.9 bits (69), Expect = 0.33
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 308 LDTPTSNMDTLTHLLKASLGTGILAMPKAFKAAGLI 415
+ T++ +L HL+K +G G+ MP A AGL+
Sbjct: 99 MSNTTTSFTSLMHLIKGCVGIGVYGMPLAVAYAGLL 134
>SB_49462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 659
Score = 31.5 bits (68), Expect = 0.44
Identities = 20/52 (38%), Positives = 26/52 (50%)
Frame = +2
Query: 200 ETFISPDEKNKEKIVSKYNMTKDAESGDFDPFTERKLDTPTSNMDTLTHLLK 355
E IS EKN EKIVS+ + +S D TE+ L S +TH +K
Sbjct: 131 EEIISTSEKNTEKIVSELSAEVTRKS---DSNTEKILSAIASQSPIITHFIK 179
>SB_32453| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 776
Score = 31.5 bits (68), Expect = 0.44
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +2
Query: 224 KNKEKIVSKYNM-TKDAESGDFDPFTERKLDTPTSNMDTLTHL 349
KNK + +++ TK+A D DP T+ KL + +N + +TH+
Sbjct: 446 KNKRSMSQRFSWKTKEAGLQDLDPDTKSKLISAPTNFNHITHM 488
>SB_17613| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1004
Score = 31.1 bits (67), Expect = 0.58
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +2
Query: 365 GTGILAMPKAFKAAGLINGILFTVIVAVVCTHCSYILVKCAHXLYKKTKK 514
GTG L +P + + G GI +I+A VC +L++C + K T K
Sbjct: 431 GTGTLGIPYSVRMGGWA-GITTILILAWVCCFTGKLLIECLYSESKSTGK 479
>SB_54489| Best HMM Match : Aa_trans (HMM E-Value=0.02)
Length = 385
Score = 30.7 bits (66), Expect = 0.76
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +2
Query: 347 LLKASLGTGILAMPKAFKAAGLINGILFTVIVAVVCTHCSYILVK 481
L G GILA+P + AG+I+G + IVA + + L++
Sbjct: 21 LFNVLTGVGILALPSSIAKAGIISGSICLTIVAFMAFVSATFLIE 65
>SB_51521| Best HMM Match : DNA_binding_1 (HMM E-Value=1.1e-32)
Length = 102
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = -3
Query: 411 NPAALKALGMAKIPVPREAFNKCVRVSIFEVGVSNFLSVNGSKSPD 274
NP A +A+GMA P C RV + + G+ + S+NG K+ +
Sbjct: 43 NPKAARAVGMAMKSNPLSIIMPCHRV-VSKNGIGFYSSLNGIKTKE 87
>SB_43808| Best HMM Match : DNA_binding_1 (HMM E-Value=1.1e-32)
Length = 174
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = -3
Query: 411 NPAALKALGMAKIPVPREAFNKCVRVSIFEVGVSNFLSVNGSKSPD 274
NP A +A+GMA P C RV + + G+ + S+NG K+ +
Sbjct: 115 NPKAARAVGMAMKSNPLSIIMPCHRV-VSKNGIGFYSSLNGIKTKE 159
>SB_43806| Best HMM Match : DNA_binding_1 (HMM E-Value=1.9e-31)
Length = 174
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = -3
Query: 411 NPAALKALGMAKIPVPREAFNKCVRVSIFEVGVSNFLSVNGSKSPD 274
NP A +A+GMA P C RV + + G+ + S+NG K+ +
Sbjct: 115 NPKAARAVGMAMKSNPLSIIMPCHRV-VSKNGIGFYSSLNGIKTKE 159
>SB_33236| Best HMM Match : DNA_binding_1 (HMM E-Value=1.1e-32)
Length = 174
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = -3
Query: 411 NPAALKALGMAKIPVPREAFNKCVRVSIFEVGVSNFLSVNGSKSPD 274
NP A +A+GMA P C RV + + G+ + S+NG K+ +
Sbjct: 115 NPKAARAVGMAMKSNPLSIIMPCHRV-VSKNGIGFYSSLNGIKTKE 159
>SB_41425| Best HMM Match : DCX (HMM E-Value=8.6e-06)
Length = 1098
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +1
Query: 361 PGYWNLSHAQSLQGSRIDQ 417
PG LS+AQ LQGSR+D+
Sbjct: 650 PGPQRLSYAQGLQGSRVDE 668
>SB_31406| Best HMM Match : DNA_binding_1 (HMM E-Value=1.9e-31)
Length = 174
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = -3
Query: 411 NPAALKALGMAKIPVPREAFNKCVRVSIFEVGVSNFLSVNGSKSPD 274
NP A +A+GMA P C RV + + G+ + S+NG K+ +
Sbjct: 115 NPKAARAVGMAMKSNPLSIIMPCHRV-VSKNGIGFYSSLNGIKTKE 159
>SB_19363| Best HMM Match : Neuromodulin (HMM E-Value=1.4)
Length = 361
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +2
Query: 167 SNGAIPAPQELETFISPDEK-NKEKIVSKYNMTKDAESGDFD 289
S P Q++ + + D+K NK+KIVS Y++ + + D +
Sbjct: 55 SQSKAPVNQDMVSQLEVDDKVNKDKIVSSYSINESKRNADVE 96
>SB_19426| Best HMM Match : Calx-beta (HMM E-Value=3e-06)
Length = 631
Score = 28.3 bits (60), Expect = 4.1
Identities = 23/96 (23%), Positives = 40/96 (41%)
Frame = +2
Query: 152 KMVNESNGAIPAPQELETFISPDEKNKEKIVSKYNMTKDAESGDFDPFTERKLDTPTSNM 331
+ E+NG + +L + D+ ++++ K+ ++S DF+ D T
Sbjct: 51 RRTGETNGIVYVLCKLVNGTTLDDFGNKEVIKKFTDGMTSDSCDFETVD----DAITEGN 106
Query: 332 DTLTHLLKASLGTGILAMPKAFKAAGLINGILFTVI 439
+T T L G G + P + K L N F VI
Sbjct: 107 ETYTIQLSIMAGAGEIRDPSSTKITILANDKGFGVI 142
>SB_37482| Best HMM Match : WD40 (HMM E-Value=1.1e-05)
Length = 433
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 224 KNKEKIVSKYNMTKDAESGDFDPFTERKLDTPTSNMDTLTH 346
KN++ I+S + + S F P T +++ N DT+TH
Sbjct: 300 KNRKSILSSLQLGRSVSSAFFSPITGQQIVATCMN-DTVTH 339
>SB_19709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 613
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +2
Query: 125 TGKSIDQRCKMVNESNGAIPAPQE--LETFISPDEKNK 232
TG +D+ M+N++N + PAPQ F++ EK K
Sbjct: 522 TGGLLDEVVDMINKNNDSEPAPQARGAAQFVTTQEKPK 559
>SB_12363| Best HMM Match : Lig_chan (HMM E-Value=2.5e-34)
Length = 960
Score = 27.9 bits (59), Expect = 5.4
Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +2
Query: 233 EKIVSKYNMTKDAESGDFDP--FTERKLDTPTSNMDTLTHLLKASLGTGILAMPKAFKAA 406
++ V+ Y+ ++ ++ F+ + K D T +TLT++ + P A+
Sbjct: 549 KRSVNDYDKEENDQALFFETKGYVSNKYDVETIETETLTNIDEGDNSEETNKQPVAYGPF 608
Query: 407 GLINGILFTVIVA 445
GL N I FT+ +A
Sbjct: 609 GLDNAICFTLALA 621
>SB_5433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1554
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 194 ELETFISPDEKNKEKIVSKYNMTKDAESGDF 286
E++ + +EK KEK+V K + ++ SG F
Sbjct: 1379 EIDEVFAAEEKEKEKVVDKVPVEQEDVSGSF 1409
>SB_21463| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1042
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +2
Query: 83 PLYYKTDK*PNLRFTGKSIDQRCKMVNESNGAIPAPQELETFISPDE 223
P+ + LR + S+D K V N A+P PQ L +SP++
Sbjct: 558 PMKLSKSQTKELRDSHTSLDDWKKSVKRGNRALPTPQHL--IVSPED 602
>SB_28252| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 106
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 367 YWNLSHAQSLQGSRIDQWNTLHGYRGRRLHSLLVYTCQ 480
Y+N ++ S S+ ++N H YR LH V+ C+
Sbjct: 24 YYN-TYGNSKYSSKFHRFNIFHKYRNFSLHISPVFNCE 60
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,928,256
Number of Sequences: 59808
Number of extensions: 362070
Number of successful extensions: 1018
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -