Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304C04f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   0.97 
SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ...    26   3.9  
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|...    26   3.9  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    25   5.2  
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    25   9.0  
SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr 2...    25   9.0  

>SPAC24H6.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 220

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = -2

Query: 223 LQKKIQNVNKVSIFILKLLKFCQLGFFGH*SYLHLNVIPKFCGPVFTNCI 74
           LQ +++N+     ++ KL + C+L   G+ S     ++   C  V TNC+
Sbjct: 158 LQGQLENME--GFWLQKLSQTCRLALTGNISEAKAFIVEIMCAGVVTNCV 205


>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 655

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +2

Query: 20  RIKKHSSALNIY*CTLIQNTIGKYRSTKLWYYI*V*ITLMTK 145
           +IK   SALN +   LIQ T G Y   KL  ++   + L T+
Sbjct: 125 QIKSFFSALNGHYVELIQTTFGSYAFEKLLSHMAAILNLETQ 166


>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 225 WYNNIPYISIATLIQIFQKIGQNIN 299
           W+NN   I+  TL Q  + +GQ +N
Sbjct: 79  WFNNTRVIAQPTLTQFREAMGQKLN 103


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1485

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/56 (25%), Positives = 27/56 (48%)
 Frame = -1

Query: 455 FFNIKRRVSEKSDKSKYM*YIFRQLKTIFKSSQVKISN*IKNKIYQFIGVGNINVL 288
           ++  KR +  ++  S+   Y+  +  T +   +V +   I N    F+G  NIN+L
Sbjct: 761 YYCFKRNLVHETKVSRLAGYVASE--TAYHHGEVSMEQTIVNLAQNFVGSNNINLL 814


>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 249 SIATLIQIFQKIGQNINISNTNKL 320
           ++  L+++  K   N N+SNT+KL
Sbjct: 658 NVGKLVELINKAFWNTNLSNTDKL 681


>SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 304

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 458 NFFNIKRRVSEKSDKSKYM*YIFRQLKTIFKSSQ 357
           N  N KR   EKSD+ + +  +  Q+K  ++S+Q
Sbjct: 152 NEANKKRERQEKSDEEQRLRLLDEQIKRAYESAQ 185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,987,596
Number of Sequences: 5004
Number of extensions: 37284
Number of successful extensions: 74
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)