Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304C04f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0233 - 15548622-15548651,15548811-15548916,15549574-155497...    28   5.2  

>07_03_0233 -
           15548622-15548651,15548811-15548916,15549574-15549725,
           15550208-15550252,15550663-15550866
          Length = 178

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -1

Query: 173 TPQILSIRVFWSLKLSTLKCNTKVLWTCIYQLYFVLKCTNKY 48
           T  IL +   W L LS   C+  + WT +   +F ++  + Y
Sbjct: 34  TTYILLLFFAWLLVLSVSACSPGIAWTVVNLAHFAVELKSNY 75


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,555,787
Number of Sequences: 37544
Number of extensions: 170297
Number of successful extensions: 335
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 335
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)