Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304C04f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z22174-2|CAA80130.2|  410|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U80027-7|AAC48119.2|  312|Caenorhabditis elegans Serpentine rece...    28   3.5  
AF026213-3|AAP68945.1|  161|Caenorhabditis elegans Hypothetical ...    27   6.2  
AF026213-2|AAB71304.2|  191|Caenorhabditis elegans Hypothetical ...    27   6.2  

>Z22174-2|CAA80130.2|  410|Caenorhabditis elegans Hypothetical
           protein K01B6.3 protein.
          Length = 410

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 101 LWTCIYQLYFVLKCTNKYLMHYCVFLSSCRI 9
           L  CI +  F L C    ++HY +FL  C +
Sbjct: 83  LLVCIIESTFALICFLAVMLHYAIFLPWCEV 113


>U80027-7|AAC48119.2|  312|Caenorhabditis elegans Serpentine
           receptor, class t protein63 protein.
          Length = 312

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -2

Query: 259 VAIDMYGMLLYQLQKKIQNVNKVSIFILKLLKFCQL 152
           +   +YG+L+Y L  + +    +S  +L LL +C +
Sbjct: 29  IVFPVYGLLIYALNSESELKENISYKLLNLLNYCDV 64


>AF026213-3|AAP68945.1|  161|Caenorhabditis elegans Hypothetical
           protein F08F1.4b protein.
          Length = 161

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -1

Query: 155 IRVFWSLKLSTLKCNTKVLWTCIYQLYFVLKCTNK 51
           +RV       ++KC  ++   C+Y+LYF     N+
Sbjct: 1   MRVMVPKNWHSIKCRNQICSKCVYELYFEYNIINR 35


>AF026213-2|AAB71304.2|  191|Caenorhabditis elegans Hypothetical
           protein F08F1.4a protein.
          Length = 191

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -1

Query: 155 IRVFWSLKLSTLKCNTKVLWTCIYQLYFVLKCTNK 51
           +RV       ++KC  ++   C+Y+LYF     N+
Sbjct: 1   MRVMVPKNWHSIKCRNQICSKCVYELYFEYNIINR 35


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,727,605
Number of Sequences: 27780
Number of extensions: 200126
Number of successful extensions: 479
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)