Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304C04f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g47720.1 68414.m05304 expressed protein contains Pfam PF05329...    29   1.4  
At5g42000.1 68418.m05113 ORMDL family protein contains Pfam doma...    27   5.8  
At5g40140.1 68418.m04871 armadillo/beta-catenin repeat family pr...    27   5.8  
At4g23820.1 68417.m03425 glycoside hydrolase family 28 protein /...    27   5.8  
At3g06210.1 68416.m00714 expressed protein contains Prosite PS00...    27   5.8  

>At1g47720.1 68414.m05304 expressed protein contains Pfam PF05329:
           Protein of unknown function (DUF731)
          Length = 261

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 18/38 (47%), Positives = 23/38 (60%)
 Frame = +3

Query: 75  IQLVNTGPQNFGITFKCR*L**PKNPN*QNLRSFRIKI 188
           IQ++NTGP  FG+ F    +  P NPN    RSFRI +
Sbjct: 68  IQVMNTGPDRFGV-FTILRVKDPLNPN----RSFRISL 100


>At5g42000.1 68418.m05113 ORMDL family protein contains Pfam domain
           PF04061: ORMDL family
          Length = 154

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -1

Query: 173 TPQILSIRVFWSLKLSTLKCNTKVLWTCIYQLYFVL 66
           T  IL +   W L LS   C+  + WT ++  +F +
Sbjct: 25  TTYILILFFSWLLVLSVFHCSPGIAWTIVHLAHFTV 60


>At5g40140.1 68418.m04871 armadillo/beta-catenin repeat family
           protein / U-box domain-containing protein contains Pfam
           domain, PF00514: Armadillo/beta-catenin-like repeats and
           Pfam, PF04564: U-box domain
          Length = 550

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 14  GTRIKKHSSALNIY*CTLIQNTIGK 88
           GT + +H SAL +Y  +L+Q+  GK
Sbjct: 364 GTELTRHDSALALYHLSLVQSNRGK 388


>At4g23820.1 68417.m03425 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein weak
           similarity to polygalacturonase PG1 [Glycine max]
           GI:5669846; contains PF00295: Glycosyl hydrolases family
           28
          Length = 444

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 338 IKNKIYQFIGVGNINVLTNLLKNLNQGGY 252
           IKN I + I + N+ V  N+  N+ +GGY
Sbjct: 296 IKNIIAEHITLSNMGVGVNIKTNIGRGGY 324


>At3g06210.1 68416.m00714 expressed protein contains Prosite
           PS00616: Histidine acid phosphatases phosphohistidine
           signature;
          Length = 840

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = +1

Query: 397 YHIYFDLSDFSDTRLLILKKLSQ 465
           +H+++D   F++  LLILKKLS+
Sbjct: 462 HHLHYDFWRFNNLGLLILKKLSR 484


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,546,831
Number of Sequences: 28952
Number of extensions: 167228
Number of successful extensions: 397
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)