Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304C03f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 131 5e-32
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 102 4e-23
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 95 6e-21
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 92 4e-20
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 92 5e-20
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 85 8e-18
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 68 1e-12
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 58 1e-09
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 57 2e-09
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 47 2e-06
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 33 0.026
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 33 0.034
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 27 1.3
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 25 5.2
SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|ch... 25 9.0
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 131 bits (317), Expect = 5e-32
Identities = 69/105 (65%), Positives = 78/105 (74%), Gaps = 1/105 (0%)
Frame = +1
Query: 172 QGGYHSLAPMYYRGAQSAIVVYDITNQDTFGRAKNWVKELQRQASPSIVIALAGNKSDLA 351
Q Y SLAPMYYR A AIVVYDIT + +AK+W+KELQRQA IVIALAGNK DLA
Sbjct: 74 QERYKSLAPMYYRNANCAIVVYDITQAASLEKAKSWIKELQRQAPEGIVIALAGNKLDLA 133
Query: 352 -AKRMVEFEEAQAYADENGLLFMETSAKTAMNVNDIFLAIANKLP 483
+R VE +A+AYA E LLF ETSAKTA NVN++F AIA KLP
Sbjct: 134 QERRAVEKADAEAYAAEANLLFFETSAKTAENVNELFTAIAKKLP 178
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 102 bits (244), Expect = 4e-23
Identities = 54/129 (41%), Positives = 73/129 (56%), Gaps = 3/129 (2%)
Frame = +1
Query: 103 ISVSRRLREDLSPKKKFRTELQ*QGG---YHSLAPMYYRGAQSAIVVYDITNQDTFGRAK 273
I V R + KK + ++ G Y ++ YYRGA A++VYDIT Q +F
Sbjct: 43 IGVEFATRNIVLDNKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVG 102
Query: 274 NWVKELQRQASPSIVIALAGNKSDLAAKRMVEFEEAQAYADENGLLFMETSAKTAMNVND 453
W+KEL+ A +IVI L GNK+DL R V EEAQA+A EN L F+ETSA A NV +
Sbjct: 103 RWLKELREHADSNIVIMLVGNKTDLLHLRAVSTEEAQAFAAENNLSFIETSAMDASNVEE 162
Query: 454 IFLAIANKL 480
F + ++
Sbjct: 163 AFQTVLTEI 171
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 95.1 bits (226), Expect = 6e-21
Identities = 41/103 (39%), Positives = 65/103 (63%)
Frame = +1
Query: 172 QGGYHSLAPMYYRGAQSAIVVYDITNQDTFGRAKNWVKELQRQASPSIVIALAGNKSDLA 351
Q + ++ YYRGA I+VYD+T+QD+F K W++E+ R A + L GNKSD+
Sbjct: 67 QERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLVGNKSDMV 126
Query: 352 AKRMVEFEEAQAYADENGLLFMETSAKTAMNVNDIFLAIANKL 480
K++VE+ A+ +AD + F+ETSAK + NV FL ++ ++
Sbjct: 127 DKKVVEYSVAKEFADSLNIPFLETSAKDSTNVEQAFLTMSRQI 169
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 92.3 bits (219), Expect = 4e-20
Identities = 45/107 (42%), Positives = 64/107 (59%)
Frame = +1
Query: 172 QGGYHSLAPMYYRGAQSAIVVYDITNQDTFGRAKNWVKELQRQASPSIVIALAGNKSDLA 351
Q + SL P Y R + AI+VYDITN ++F + W+++++ + ++I L GNK+DLA
Sbjct: 70 QERFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDVRAERGDDVIIVLVGNKTDLA 129
Query: 352 AKRMVEFEEAQAYADENGLLFMETSAKTAMNVNDIFLAIANKLPKSE 492
KR V EE + A E ++ METSAK NV +F IA LP E
Sbjct: 130 DKRQVTQEEGEKKAKELKIMHMETSAKAGHNVKLLFRKIAQMLPGME 176
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 91.9 bits (218), Expect = 5e-20
Identities = 39/107 (36%), Positives = 66/107 (61%)
Frame = +1
Query: 172 QGGYHSLAPMYYRGAQSAIVVYDITNQDTFGRAKNWVKELQRQASPSIVIALAGNKSDLA 351
Q + ++ YYRGA +++YD+T++ +F + W +++ AS ++ L GNK D
Sbjct: 68 QERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNKCDCE 127
Query: 352 AKRMVEFEEAQAYADENGLLFMETSAKTAMNVNDIFLAIANKLPKSE 492
+R V FE+ QA ADE G+ F+E SAKT +NV++ F +A ++ K +
Sbjct: 128 DQRQVSFEQGQALADELGVKFLEASAKTNVNVDEAFFTLAREIKKQK 174
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 84.6 bits (200), Expect = 8e-18
Identities = 40/104 (38%), Positives = 64/104 (61%), Gaps = 1/104 (0%)
Frame = +1
Query: 172 QGGYHSLAPMYYRGAQSAIVVYDITNQDTFGRAKNWVKELQRQASPSIVIALAGNKSDLA 351
Q + S+A YYRGA A++VYD+TN+D+F +W+ +++ A +I + LAG+KSDL
Sbjct: 72 QEKFRSVARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDIRAMAPSTICVVLAGSKSDLQ 131
Query: 352 AKRMVEFEEAQAYADENGLLFM-ETSAKTAMNVNDIFLAIANKL 480
+R V EEA + E + ETS+ T NV + FL++ + +
Sbjct: 132 NQRQVSTEEAAEFCSEKHISSAHETSSYTGSNVEECFLSVVSTI 175
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 67.7 bits (158), Expect = 1e-12
Identities = 41/106 (38%), Positives = 56/106 (52%), Gaps = 6/106 (5%)
Frame = +1
Query: 172 QGGYHSLAPMYYRGAQSAIVVYDITNQDTFGRAKNWVKELQRQASPS----IVIALAGNK 339
Q + SL +YRGA ++VYD+ N +F +W E QASPS L GNK
Sbjct: 67 QERFQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPETFPFILLGNK 126
Query: 340 SDL-AAKRMVEFEEAQAYADENG-LLFMETSAKTAMNVNDIFLAIA 471
D+ KRMV +A A+ G + + ETSAK A+NV + F +A
Sbjct: 127 VDVEEQKRMVSKSKALAFCQARGEIPYFETSAKEAINVQEAFETVA 172
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 57.6 bits (133), Expect = 1e-09
Identities = 29/104 (27%), Positives = 55/104 (52%), Gaps = 1/104 (0%)
Frame = +1
Query: 172 QGGYHSLAPMYYRGAQSAIVVYDITNQDTFGRAKNWVKELQR-QASPSIVIALAGNKSDL 348
Q Y ++ Y R + ++VY+IT++ +F + +++ R + + + L NK DL
Sbjct: 66 QEEYSAMREQYMRTGEGFLLVYNITSRSSFDEISTFYQQILRVKDKDTFPVVLVANKCDL 125
Query: 349 AAKRMVEFEEAQAYADENGLLFMETSAKTAMNVNDIFLAIANKL 480
A+R+V E + A L++ETSAK +NV + F ++ +
Sbjct: 126 EAERVVSRAEGEQLAKSMHCLYVETSAKLRLNVEEAFYSLVRTI 169
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 56.8 bits (131), Expect = 2e-09
Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 7/114 (6%)
Frame = +1
Query: 172 QGGYHSLAPMYYRGAQSAIVVYDITNQDTFGRAKNWVKELQRQASP---SIVIALAGNKS 342
Q + SL +YRGA ++VY++ N +F +NW +E Q S + + GN+
Sbjct: 67 QERFQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTSQDECAFPFIIVGNQI 126
Query: 343 DL-AAKRMVEFEEAQAYADE---NGLLFMETSAKTAMNVNDIFLAIANKLPKSE 492
D A+KR V A Y + ++ E SAK NV D+F ++ ++E
Sbjct: 127 DKDASKRAVSLHRALDYCKSKHGSNMIHFEASAKENTNVTDLFETVSRLALENE 180
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 46.8 bits (106), Expect = 2e-06
Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 1/106 (0%)
Frame = +1
Query: 172 QGGYHSLAPMYYRGAQSAIVVYDITNQDTFGRAKNWV-KELQRQASPSIVIALAGNKSDL 348
Q Y L + G ++VY IT++ +F K K L + + I + GNKSDL
Sbjct: 64 QDEYSILNSKHSIGIHGYVLVYSITSKSSFEMVKIVRDKILNHTGTEWVPIVVVGNKSDL 123
Query: 349 AAKRMVEFEEAQAYADENGLLFMETSAKTAMNVNDIFLAIANKLPK 486
+R V EE +A A+E + E SA+ NV F I +++ K
Sbjct: 124 HMQRAVTAEEGKALANEWKCAWTEASARHNENVARAFELIISEIEK 169
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 33.1 bits (72), Expect = 0.026
Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 14/120 (11%)
Frame = +1
Query: 172 QGGYHSLAPMYYRGAQSAIVVYDITNQDTFGRA-KNWVKELQRQASPSIVIALAGNKSDL 348
Q Y L P+ Y + ++ + I + + W E+Q P I L G K+DL
Sbjct: 74 QEEYDRLRPLSYPNSNVILLCFSIDCPASLNNVTEKWYPEVQHFC-PRTPIVLVGLKADL 132
Query: 349 AAKRM------------VEFEEAQAYADENGLLFMETSAKTAMNVNDIF-LAIANKLPKS 489
R V +++AQ+ A ++E SAK VN++F LA+ + KS
Sbjct: 133 RKDRNATEVLRTQGLTPVTYQQAQSVALSMNAPYVECSAKENTGVNEVFQLAVGLTIKKS 192
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 32.7 bits (71), Expect = 0.034
Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 10/110 (9%)
Frame = +1
Query: 172 QGGYHSLAPMYYRGAQSAIVVYDITNQDTFGRA-KNWVKELQRQASPSIVIALAGNKSDL 348
Q Y L + Y ++ + + ++D+ W+ E+ P + + L K DL
Sbjct: 71 QEEYDQLRSLSYSDTHVIMICFAVDSRDSLENVITKWLPEVSSNC-PGVKLVLVALKCDL 129
Query: 349 AA--------KRMVEFEEAQAYADE-NGLLFMETSAKTAMNVNDIFLAIA 471
+++++EE A A + N + ++E SAK VN+ F A
Sbjct: 130 RGADEEQVDHSKIIDYEEGLAAAKKINAVRYLECSAKLNRGVNEAFTEAA 179
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 27.5 bits (58), Expect = 1.3
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 331 PPERSLSTERPAVGVPSPSSWRDRM 257
P L+ R ++G PSPS+W +R+
Sbjct: 370 PKAEYLNQSRASMGNPSPSNWNNRL 394
>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 732
Score = 25.4 bits (53), Expect = 5.2
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = -3
Query: 363 HALGCEVALVARQSDHYRRRGLPLEFLHPVLGATECVLISYIIYYNSRLGS 211
H GC V A + H R+ + E L +L T+ +Y++ + R GS
Sbjct: 552 HPYGCRVIQRAIEHCHSERKLIIEELLPHILKLTQDQYGNYVVQHILRTGS 602
>SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 244
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +2
Query: 113 HGDFVKICRPRKSSERSYNNREG 181
HGD ++ + +K+ R Y NR G
Sbjct: 213 HGDVGQVYKQKKTKYRQYMNRPG 235
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,856,333
Number of Sequences: 5004
Number of extensions: 33294
Number of successful extensions: 113
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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