Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304C01f
         (446 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe...   126   1e-30
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    27   0.99 
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    27   1.3  
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ...    26   3.0  
SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein homolog|Schizos...    25   4.0  
SPAC1D4.01 ||SPAC1F3.11|sequence orphan|Schizosaccharomyces pomb...    25   7.0  
SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme Ubc13|Sch...    24   9.3  
SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/ diacylg...    24   9.3  

>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score =  126 bits (305), Expect = 1e-30
 Identities = 61/84 (72%), Positives = 70/84 (83%)
 Frame = +1

Query: 115 YKIADEKLAEWGRKEIMLAEKEMPGLMACRRKYAPAKILKGARIAGSLHMTVQTAVLIET 294
           YK+AD  LA +GRKE+ +AE EMPGL+A R KYA ++ LKGARIAG LHMT+QTAVLIET
Sbjct: 6   YKVADISLAAFGRKELEIAENEMPGLIAVREKYAKSQPLKGARIAGCLHMTIQTAVLIET 65

Query: 295 LIELGAEVQWSSSNIYSTQDEAAA 366
           L+ LGAEV WSS NIYSTQD AAA
Sbjct: 66  LVALGAEVTWSSCNIYSTQDHAAA 89



 Score = 49.2 bits (112), Expect = 3e-07
 Identities = 15/25 (60%), Positives = 23/25 (92%)
 Frame = +2

Query: 368 ALVAVGIPIYAWKGETDDEYIWCID 442
           A+ A G+P++AWKGET++EY+WCI+
Sbjct: 90  AIAATGVPVFAWKGETEEEYLWCIE 114


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 27.5 bits (58), Expect = 0.99
 Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
 Frame = +1

Query: 13  PIYFRYFNKNNLKRKQQVNLP*VYQTLYYKMKPPYKIADEKL--AEWGRKEIMLAEKEMP 186
           P YF +  KN     +   LP  YQ +  +  PPY     KL     G KE  +A  + P
Sbjct: 8   PYYFTH-EKNLNNASKYSELPIAYQEIPLQSLPPYPKVASKLKGVVAGGKENNIASFQKP 66

Query: 187 GLMACRRKYAPA 222
              A  R Y P+
Sbjct: 67  SSKA-TRPYIPS 77


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 14/56 (25%), Positives = 25/56 (44%)
 Frame = -3

Query: 246 YSGTFEYFSWSIFPTTCHKAWHFFLC*HNFFSAPFSQFLVSDFVRRLHFVVQSLIY 79
           Y   +  ++W  F  T +K  H+FL  H +   P + F+         F V S+++
Sbjct: 356 YDDWWNCWTWDQFARTWNKPVHYFLLRHVY--VPLNSFMSKSLSTFFTFFVSSVLH 409


>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 293

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 18/61 (29%), Positives = 25/61 (40%)
 Frame = +3

Query: 156 RNYVSRERNARPYGMSSEICSS*NTQRCQNSRQLTHDSTNSGSY*DFNRIGSRGTMVQQ* 335
           R+Y    R ++PY  S    SS        S  ++  STNS      N   SR T + + 
Sbjct: 90  RSYSGNPRLSKPYASSKLAASSRTASYQAMSYSVSPTSTNSSVATSLNYQSSRETGISKD 149

Query: 336 H 338
           H
Sbjct: 150 H 150


>SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 196

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 206 RRHAIRPGISFSANIISFRPHSANFSS 126
           R  A++PG +   +I  +RP   NF+S
Sbjct: 31  RERAVKPGYTAPEDIKRYRPGRGNFAS 57


>SPAC1D4.01 ||SPAC1F3.11|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 285

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 8   KSQFISGILIKITSKENSK*IYRRY 82
           + +FI  +L  I+  E SK IYRR+
Sbjct: 252 RDEFIEKMLKPISQDEESKGIYRRF 276


>SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme
           Ubc13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 148

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 372 WLP*EYPSMPGREKLMTSIF 431
           +LP EYP MP   + +T I+
Sbjct: 56  FLPDEYPMMPPNVRFLTKIY 75


>SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/
           diacylglycerol ethanolaminesphotranferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 386

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -2

Query: 430 NILVISFSLPGIDGYSYGNQCRLRPRLVYYKCY 332
           N+L++ F +  +D Y++G    ++    Y+ CY
Sbjct: 317 NVLILPFLVDAVDAYTFGVLKNVQTE--YFFCY 347


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,934,334
Number of Sequences: 5004
Number of extensions: 39150
Number of successful extensions: 89
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)