Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304C01f
(446 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0204 - 14844634-14844789,14844882-14845418,14846280-14846888 65 3e-11
05_04_0048 - 17493775-17494431,17494506-17494801,17494851-174949... 31 0.32
09_06_0342 + 22410674-22411060,22412219-22412299,22412376-224125... 29 2.3
09_04_0606 + 18909065-18909218,18909674-18909737,18910895-189110... 28 3.0
08_01_0178 - 1509100-1511214 28 3.9
03_01_0515 - 3864796-3865425 28 3.9
12_01_0973 - 9803378-9803724,9804057-9804163,9804208-9804443,980... 27 6.9
11_04_0187 - 14667078-14667167,14667397-14667575,14667676-14667766 27 6.9
>11_04_0204 - 14844634-14844789,14844882-14845418,14846280-14846888
Length = 433
Score = 64.9 bits (151), Expect = 3e-11
Identities = 29/43 (67%), Positives = 35/43 (81%)
Frame = +1
Query: 181 MPGLMACRRKYAPAKILKGARIAGSLHMTVQTAVLIETLIELG 309
MPGLMACR ++ P++ KGARI+GSLH T+Q AVLIETL LG
Sbjct: 1 MPGLMACRAEFGPSQPFKGARISGSLHRTIQAAVLIETLTALG 43
Score = 32.3 bits (70), Expect = 0.18
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +2
Query: 392 IYAWKGETDDEYIWCID 442
++AWKGET +EY WC +
Sbjct: 72 VFAWKGETLEEYWWCTE 88
>05_04_0048 -
17493775-17494431,17494506-17494801,17494851-17494958,
17495463-17495544,17495561-17495740
Length = 440
Score = 31.5 bits (68), Expect = 0.32
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 6/89 (6%)
Frame = +1
Query: 154 KEIMLAEKEMPGLMACRRKYAPAKILKGARIAGSLHMTV------QTAVLIETLIELGAE 315
KE+M E PG++ R + +++ IA LH V QTA L+ + L +
Sbjct: 197 KELMEGVSE-PGVLQSRLSKITSFLVQATSIAAGLHDEVPLQIRGQTAALVTQISGLEQQ 255
Query: 316 VQWSSSNIYSTQDEAAACTGCRRNTHLCL 402
V+ S + ST+DE + T +
Sbjct: 256 VEELSKKLCSTEDELEVTNAMLKETQAAM 284
>09_06_0342 +
22410674-22411060,22412219-22412299,22412376-22412579,
22412765-22412959,22413064-22413228,22413501-22413761,
22413908-22414126,22414285-22414504,22414591-22414613,
22414728-22414766
Length = 597
Score = 28.7 bits (61), Expect = 2.3
Identities = 21/73 (28%), Positives = 35/73 (47%)
Frame = +1
Query: 106 KPPYKIADEKLAEWGRKEIMLAEKEMPGLMACRRKYAPAKILKGARIAGSLHMTVQTAVL 285
+PP + ++ GR+ EKE L +R+ A+IL G R G+ ++ V+ A +
Sbjct: 33 RPP--LQQQQQVGLGRRGRAREEKERTKLRERQRRAITARILAGLRRHGNYNLRVR-ADI 89
Query: 286 IETLIELGAEVQW 324
E + L E W
Sbjct: 90 NEVIAALAREAGW 102
>09_04_0606 +
18909065-18909218,18909674-18909737,18910895-18911023,
18913680-18913830,18914369-18914491,18915638-18915711,
18916048-18916591,18916948-18917085,18917159-18917203
Length = 473
Score = 28.3 bits (60), Expect = 3.0
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = -2
Query: 388 YSYGNQCRLRPRLVYYKCYCWTIVPLLPILLKSQ*EPLFVLSCVSCRLFWHL 233
Y N + +L +C W VPLL L+ Q EP + S +FW L
Sbjct: 307 YGCWNDFNVLYKLTCRECKDWRCVPLLWYLIMVQLEPSELPMAFSKAVFWAL 358
>08_01_0178 - 1509100-1511214
Length = 704
Score = 27.9 bits (59), Expect = 3.9
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +1
Query: 244 IAGSLHMTVQTAVLIETLIELGAEVQWSSSNIYSTQDEAAACTGCRRNTH 393
+AG H VQ V + T E EV+ + +T+D AAA R H
Sbjct: 510 VAGE-HAVVQRPVEVATNTEPSIEVERERFRVEATEDIAAAQEAAERGAH 558
>03_01_0515 - 3864796-3865425
Length = 209
Score = 27.9 bits (59), Expect = 3.9
Identities = 19/61 (31%), Positives = 24/61 (39%)
Frame = -3
Query: 360 GLVLCTINVTAGPLYLCSQFY*SLNKNRCLYCHV*AAGYSGTFEYFSWSIFPTTCHKAWH 181
G L +NV +G CS N L +V A + + F W I TT K W
Sbjct: 149 GAKLVYVNVVSGQTQPCS----GGGSNYQLVINVAAGVRTAQYSVFVWGILGTTTWKLWS 204
Query: 180 F 178
F
Sbjct: 205 F 205
>12_01_0973 -
9803378-9803724,9804057-9804163,9804208-9804443,
9804513-9804799,9806226-9806331
Length = 360
Score = 27.1 bits (57), Expect = 6.9
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Frame = +1
Query: 271 QTAVLIETLIELGAEV---QWSSSNIYSTQDEAAACTGCRRNTHLC 399
Q +L + + G +V Q Y T +E AC GC N LC
Sbjct: 213 QLRILCPGIYDFGGDVARFQRYKEAFYFTLNELVACIGCCLNLELC 258
>11_04_0187 - 14667078-14667167,14667397-14667575,14667676-14667766
Length = 119
Score = 27.1 bits (57), Expect = 6.9
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -3
Query: 393 MGIPTATSAGCGLVLCTINVTAGPLYLCSQ 304
MG+ A S G L +C VTAG Y CS+
Sbjct: 43 MGVKKAASIGVKLNVCA--VTAGGFYCCSK 70
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,259,500
Number of Sequences: 37544
Number of extensions: 245437
Number of successful extensions: 509
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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