Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304C01f
         (446 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19018| Best HMM Match : No HMM Matches (HMM E-Value=.)             145   2e-35
SB_4195| Best HMM Match : No HMM Matches (HMM E-Value=.)               45   3e-05
SB_36748| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.19 
SB_21598| Best HMM Match : DUF1642 (HMM E-Value=9.6)                   28   3.1  
SB_32822| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  
SB_2073| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.3  
SB_12514| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  

>SB_19018| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 434

 Score =  145 bits (351), Expect = 2e-35
 Identities = 69/87 (79%), Positives = 76/87 (87%)
 Frame = +1

Query: 106 KPPYKIADEKLAEWGRKEIMLAEKEMPGLMACRRKYAPAKILKGARIAGSLHMTVQTAVL 285
           K PYK+AD  LAEWGRKEI+LAE EMPGLMA R++Y P+K LKGARIAG LHMT+QTAVL
Sbjct: 6   KLPYKVADISLAEWGRKEIVLAENEMPGLMALRKEYGPSKPLKGARIAGCLHMTIQTAVL 65

Query: 286 IETLIELGAEVQWSSSNIYSTQDEAAA 366
           IETL ELGAEVQWSS NI+STQD AAA
Sbjct: 66  IETLTELGAEVQWSSCNIFSTQDHAAA 92



 Score = 51.2 bits (117), Expect = 4e-07
 Identities = 17/25 (68%), Positives = 22/25 (88%)
 Frame = +2

Query: 368 ALVAVGIPIYAWKGETDDEYIWCID 442
           A+   G+P+YAWKGETD+EYIWCI+
Sbjct: 93  AIAKTGVPVYAWKGETDEEYIWCIE 117


>SB_4195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 344

 Score = 44.8 bits (101), Expect = 3e-05
 Identities = 19/29 (65%), Positives = 25/29 (86%)
 Frame = +1

Query: 280 VLIETLIELGAEVQWSSSNIYSTQDEAAA 366
           VLIETL+ LGA+++W + NIYSTQ+E AA
Sbjct: 125 VLIETLMALGAQIRWCACNIYSTQNEVAA 153



 Score = 36.7 bits (81), Expect = 0.009
 Identities = 11/25 (44%), Positives = 20/25 (80%)
 Frame = +2

Query: 368 ALVAVGIPIYAWKGETDDEYIWCID 442
           A+   G+ I+AWKGE+++++ WCI+
Sbjct: 154 AMAESGLSIFAWKGESEEDFWWCIE 178


>SB_36748| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 329

 Score = 32.3 bits (70), Expect = 0.19
 Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
 Frame = +1

Query: 97  YKMKPPYKIADEKLAEWGRKEIMLAEKEMPGLMACRR--KYAPAKILKGARIAGSLHMTV 270
           YKM P  KIA +K+ +  RK +   E     +  CR   K    +ILK  ++ G      
Sbjct: 219 YKMVPDKKIACDKIRDVIRKHLRFLETTEYEVNRCREISKLLSNRILKDLKLLGFPRYKF 278

Query: 271 QTAVLIETLIELGAEVQWSSSNIYSTQDE 357
            ++V I  +  LG  V+ +S  ++ T+ +
Sbjct: 279 VSSVCIGQM--LGQSVRIASRCVWDTESD 305


>SB_21598| Best HMM Match : DUF1642 (HMM E-Value=9.6)
          Length = 151

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
 Frame = +1

Query: 109 PPYKIADEKLAEWG--RKEIMLAEKEMPG 189
           PP+ +A  +L +WG  RKE++   ++MPG
Sbjct: 119 PPHNVAVTELKDWGQFRKEVVKWLEKMPG 147


>SB_32822| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1409

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +1

Query: 253 SLHMTVQTAVLIETLIELGAEVQWSSSNIYSTQDEAAACTGCRRNTHLC 399
           ++H   Q+  L+ETL +LG  + +      STQ E   C        +C
Sbjct: 440 AVHAKTQSRDLVETLNKLGISISYERVLSISTQLENEVCRRYHEQGAVC 488


>SB_2073| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 394

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 69  IHLLFSFEVIFIKIPEINWDL 7
           I  LF F  +  KIP+INWD+
Sbjct: 70  IIFLFYFFCLVQKIPQINWDM 90


>SB_12514| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 16/66 (24%), Positives = 31/66 (46%)
 Frame = +1

Query: 163 MLAEKEMPGLMACRRKYAPAKILKGARIAGSLHMTVQTAVLIETLIELGAEVQWSSSNIY 342
           +L++   P     +RKY      K   +A SL  T+    +   +++L AE++   +N +
Sbjct: 23  ILSDTFQPFYFKLQRKYYVNTTYKFRDLACSLKYTIGVCYVRNKVLDLSAEIRTYFNNTF 82

Query: 343 STQDEA 360
           S +  A
Sbjct: 83  SKRQTA 88


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,321,244
Number of Sequences: 59808
Number of extensions: 283580
Number of successful extensions: 636
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 883875528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)