Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304C01f
         (446 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S57284-1|AAB25906.1|  437|Caenorhabditis elegans S-adenosylhomoc...   139   1e-33
M64306-1|AAA28062.1|  437|Caenorhabditis elegans S-adenosylhomoc...   139   1e-33
AF043699-5|AAB97565.1|  437|Caenorhabditis elegans Hypothetical ...   139   1e-33
Z81512-4|CAB04170.1|  550|Caenorhabditis elegans Hypothetical pr...    27   6.2  

>S57284-1|AAB25906.1|  437|Caenorhabditis elegans
           S-adenosylhomocysteine hydrolase protein.
          Length = 437

 Score =  139 bits (336), Expect = 1e-33
 Identities = 67/87 (77%), Positives = 75/87 (86%)
 Frame = +1

Query: 106 KPPYKIADEKLAEWGRKEIMLAEKEMPGLMACRRKYAPAKILKGARIAGSLHMTVQTAVL 285
           KP YK+AD KLA++GRKEI+LAE EMPGLMA R KY P++ LKGARIAG LHMT+QTAVL
Sbjct: 5   KPAYKVADIKLADFGRKEIILAENEMPGLMAMRSKYGPSQPLKGARIAGCLHMTIQTAVL 64

Query: 286 IETLIELGAEVQWSSSNIYSTQDEAAA 366
           IETL  LGAEVQWSS NI+STQD AAA
Sbjct: 65  IETLTALGAEVQWSSCNIFSTQDHAAA 91



 Score = 48.4 bits (110), Expect = 2e-06
 Identities = 16/25 (64%), Positives = 21/25 (84%)
 Frame = +2

Query: 368 ALVAVGIPIYAWKGETDDEYIWCID 442
           A+   G+P+YAWKGETD+EY WCI+
Sbjct: 92  AIAQTGVPVYAWKGETDEEYEWCIE 116


>M64306-1|AAA28062.1|  437|Caenorhabditis elegans
           S-adenosylhomocysteine hydrolase protein.
          Length = 437

 Score =  139 bits (336), Expect = 1e-33
 Identities = 67/87 (77%), Positives = 75/87 (86%)
 Frame = +1

Query: 106 KPPYKIADEKLAEWGRKEIMLAEKEMPGLMACRRKYAPAKILKGARIAGSLHMTVQTAVL 285
           KP YK+AD KLA++GRKEI+LAE EMPGLMA R KY P++ LKGARIAG LHMT+QTAVL
Sbjct: 5   KPAYKVADIKLADFGRKEIILAENEMPGLMAMRSKYGPSQPLKGARIAGCLHMTIQTAVL 64

Query: 286 IETLIELGAEVQWSSSNIYSTQDEAAA 366
           IETL  LGAEVQWSS NI+STQD AAA
Sbjct: 65  IETLTALGAEVQWSSCNIFSTQDHAAA 91



 Score = 48.4 bits (110), Expect = 2e-06
 Identities = 16/25 (64%), Positives = 21/25 (84%)
 Frame = +2

Query: 368 ALVAVGIPIYAWKGETDDEYIWCID 442
           A+   G+P+YAWKGETD+EY WCI+
Sbjct: 92  AIAQTGVPVYAWKGETDEEYEWCIE 116


>AF043699-5|AAB97565.1|  437|Caenorhabditis elegans Hypothetical
           protein K02F2.2 protein.
          Length = 437

 Score =  139 bits (336), Expect = 1e-33
 Identities = 67/87 (77%), Positives = 75/87 (86%)
 Frame = +1

Query: 106 KPPYKIADEKLAEWGRKEIMLAEKEMPGLMACRRKYAPAKILKGARIAGSLHMTVQTAVL 285
           KP YK+AD KLA++GRKEI+LAE EMPGLMA R KY P++ LKGARIAG LHMT+QTAVL
Sbjct: 5   KPAYKVADIKLADFGRKEIILAENEMPGLMAMRSKYGPSQPLKGARIAGCLHMTIQTAVL 64

Query: 286 IETLIELGAEVQWSSSNIYSTQDEAAA 366
           IETL  LGAEVQWSS NI+STQD AAA
Sbjct: 65  IETLTALGAEVQWSSCNIFSTQDHAAA 91



 Score = 48.4 bits (110), Expect = 2e-06
 Identities = 16/25 (64%), Positives = 21/25 (84%)
 Frame = +2

Query: 368 ALVAVGIPIYAWKGETDDEYIWCID 442
           A+   G+P+YAWKGETD+EY WCI+
Sbjct: 92  AIAQTGVPVYAWKGETDEEYEWCIE 116


>Z81512-4|CAB04170.1|  550|Caenorhabditis elegans Hypothetical
           protein F25C8.4 protein.
          Length = 550

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -3

Query: 144 FSQFLVSDFVRRLHFVVQSLIYLR 73
           F+QF   D +++  F+ +SL+YL+
Sbjct: 40  FAQFTFQDVMQKADFIAKSLVYLK 63


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,708,416
Number of Sequences: 27780
Number of extensions: 222341
Number of successful extensions: 491
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 777938954
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)