Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304C01f
         (446 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g13940.1 68417.m02157 adenosylhomocysteinase / S-adenosyl-L-h...   119   1e-27
At3g23810.1 68416.m02993 adenosylhomocysteinase, putative / S-ad...   115   1e-26
At4g39070.1 68417.m05533 zinc finger (B-box type) family protein...    28   3.3  
At2g34360.1 68415.m04207 MATE efflux family protein similar to r...    28   3.3  
At1g53430.1 68414.m06056 leucine-rich repeat family protein / pr...    28   3.3  
At5g64860.1 68418.m08159 4-alpha-glucanotransferase, putative / ...    27   5.8  
At3g15440.1 68416.m01959 expressed protein                             27   7.6  

>At4g13940.1 68417.m02157 adenosylhomocysteinase /
           S-adenosyl-L-homocysteine hydrolase / AdoHcyase (SAHH)
           identical to SP|O23255 Adenosylhomocysteinase (EC
           3.3.1.1) (S-adenosyl-L-homocysteine hydrolase)
           (AdoHcyase) {Arabidopsis thaliana}; strong similarity to
           SP|P50248 Adenosylhomocysteinase (EC 3.3.1.1) {Nicotiana
           sylvestris}
          Length = 485

 Score =  119 bits (286), Expect = 1e-27
 Identities = 56/84 (66%), Positives = 67/84 (79%)
 Frame = +1

Query: 115 YKIADEKLAEWGRKEIMLAEKEMPGLMACRRKYAPAKILKGARIAGSLHMTVQTAVLIET 294
           YK+ D   A++GR E+ LAE EMPGLMACR ++ P++  KGARI GSLHMT+QTAVLIET
Sbjct: 14  YKVKDMSQADFGRLELELAEVEMPGLMACRTEFGPSQPFKGARITGSLHMTIQTAVLIET 73

Query: 295 LIELGAEVQWSSSNIYSTQDEAAA 366
           L  LGAEV+W S NI+STQD AAA
Sbjct: 74  LTALGAEVRWCSCNIFSTQDHAAA 97



 Score = 31.5 bits (68), Expect = 0.27
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +2

Query: 392 IYAWKGETDDEYIWCID 442
           ++AWKGET  EY WC +
Sbjct: 106 VFAWKGETLQEYWWCTE 122


>At3g23810.1 68416.m02993 adenosylhomocysteinase, putative /
           S-adenosyl-L-homocysteine hydrolase, putative /
           AdoHcyase, putative strong similarity to
           SP|P50248|SAHH_TOBAC Adenosylhomocysteinase (EC 3.3.1.1)
           (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
           {Nicotiana sylvestris}; contains Pfam profile PF00670:
           S-adenosyl-L-homocysteine hydrolase, NAD binding domain
          Length = 485

 Score =  115 bits (277), Expect = 1e-26
 Identities = 55/84 (65%), Positives = 67/84 (79%)
 Frame = +1

Query: 115 YKIADEKLAEWGRKEIMLAEKEMPGLMACRRKYAPAKILKGARIAGSLHMTVQTAVLIET 294
           YK+ D   A++GR EI LAE EMPGL++C  ++ P++ LKGARI GSLHMT+QTAVLIET
Sbjct: 14  YKVKDMSQADFGRLEIELAEVEMPGLVSCVTEFGPSQPLKGARITGSLHMTIQTAVLIET 73

Query: 295 LIELGAEVQWSSSNIYSTQDEAAA 366
           L  LGAEV+W S NI+STQD AAA
Sbjct: 74  LTALGAEVRWCSCNIFSTQDHAAA 97



 Score = 31.5 bits (68), Expect = 0.27
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +2

Query: 392 IYAWKGETDDEYIWCID 442
           ++AWKGET  EY WC +
Sbjct: 106 VFAWKGETLQEYWWCTE 122


>At4g39070.1 68417.m05533 zinc finger (B-box type) family protein
           salt-tolerance protein - Arabidopsis thaliana,
           PID:e224078
          Length = 242

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 331 SNIYSTQDEAAACTGCRRNTH 393
           ++++   DEAA C GC R+ H
Sbjct: 13  ASVFCCADEAALCNGCDRHVH 33


>At2g34360.1 68415.m04207 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile PF01554:
           Uncharacterized membrane protein family
          Length = 466

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 13/47 (27%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
 Frame = +1

Query: 235 GARIAGSLHMTVQTAVLIETLIELGAEVQWSSSN---IYSTQDEAAA 366
           GA++ G L + +Q A+L+ TL+ +   + W+++    ++  QD++ A
Sbjct: 98  GAKMYGMLGIQMQRAMLVLTLLSVPLSIVWANTEHFLVFFGQDKSIA 144


>At1g53430.1 68414.m06056 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 1030

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = -2

Query: 430 NILVISFSLPGIDGYSYGNQCRLR 359
           NI + SFSLPGI    +GN  RLR
Sbjct: 94  NIQLKSFSLPGIFPPEFGNLTRLR 117


>At5g64860.1 68418.m08159 4-alpha-glucanotransferase, putative /
           disproportionating enzyme, putative similar to
           4-alpha-glucanotransferase SP:Q06801 from [Solanum
           tuberosum]
          Length = 576

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 383 GIPIYAWKGETDDEYIWCID 442
           G P+Y WK    D+Y W ++
Sbjct: 339 GSPLYDWKAMESDQYSWWVN 358


>At3g15440.1 68416.m01959 expressed protein
          Length = 143

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 60 LFSFEVIFIKIPEINWD 10
          LF FEV++ K+PE N D
Sbjct: 32 LFDFEVVYTKVPEPNSD 48


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,945,824
Number of Sequences: 28952
Number of extensions: 199485
Number of successful extensions: 445
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 722638680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)