Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304B12f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    26   3.9  
SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces...    25   5.2  
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr...    25   6.8  
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.0  

>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1396

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 416  FLNNNKSVFIFFFYVYRIHHRNFL 345
            F N  + +  FFF +Y+I  RNF+
Sbjct: 1059 FPNETRFMTSFFFQIYKISMRNFV 1082


>SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 316

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = -1

Query: 467 LWAEIECVNISKIWNVLFLNNNKSVFIFFFYVYRIHHRNFLHRLY 333
           L+ + + +N S+ W   FL+     F+F  ++  I    F ++LY
Sbjct: 72  LFVDKQSINTSRSWFRAFLSFLSICFLFISFLNFIFSTRFQNKLY 116


>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 515

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +2

Query: 176 LKPVADRKLSYAKAKISKLG*AKLEINGVHAKS*AKAQS-VLR 301
           +KP A +     K KISKLG A+ +   V  KS  K  + +LR
Sbjct: 232 IKPKAKKGNQMQKIKISKLGTAETQTEDVMNKSSQKENNDILR 274


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1379

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 109 GAFNRMMVVKKT*TIIT*YNRCPHSPRTTDVSLRN 5
           G + R    K++ T+ T     PH PR+   SL+N
Sbjct: 133 GYYERTSTRKRSLTVPTPRTSFPHHPRSRRFSLKN 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,937,252
Number of Sequences: 5004
Number of extensions: 35216
Number of successful extensions: 74
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)