Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304B12f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0599 + 5368091-5368123,5368212-5368383,5369237-5369335,536...    29   1.7  
11_06_0326 - 22382001-22383248                                         27   6.9  
06_03_0785 - 24563310-24565004,24565302-24565384,24565484-245660...    27   9.1  

>05_01_0599 +
           5368091-5368123,5368212-5368383,5369237-5369335,
           5369636-5369748,5369824-5369916,5370081-5370244,
           5370328-5370564,5370739-5370883,5370982-5371160,
           5371997-5372142,5372239-5372366,5372441-5372614,
           5372706-5372735,5373219-5373380,5373460-5373705,
           5373733-5373870,5373974-5374174,5374304-5374448,
           5374575-5374681,5374830-5374970,5375274-5375539,
           5375621-5375745,5375843-5376109,5376250-5376263
          Length = 1174

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 81  KKHKQLSPDIIDVLTHHGRLMCHYV 7
           K H  LS  I D++ H+GRL+ H V
Sbjct: 91  KSHYYLSCQIFDIIKHNGRLISHAV 115


>11_06_0326 - 22382001-22383248
          Length = 415

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/59 (25%), Positives = 29/59 (49%)
 Frame = +2

Query: 155 IQDPSPCLKPVADRKLSYAKAKISKLG*AKLEINGVHAKS*AKAQSVLRSSISRTTLAM 331
           +  P P L+PV D  ++     ++K      +   +  K+   A +VL S+++ TT A+
Sbjct: 276 VASPLPALQPVLDAVVASGVGDLAKYAQNPAQAAALLGKNPILAAAVLNSALASTTAAL 334


>06_03_0785 - 24563310-24565004,24565302-24565384,24565484-24566039,
            24566397-24566513,24566565-24567131,24568632-24568702,
            24569833-24569903,24570270-24570441,24571229-24572212,
            24573128-24574808
          Length = 1998

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 383  FFYVYRIHHRNFLHRL 336
            FFYV R+HH  F+ +L
Sbjct: 1689 FFYVLRVHHLEFVEKL 1704


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,060,375
Number of Sequences: 37544
Number of extensions: 212286
Number of successful extensions: 384
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 384
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)