Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304B12f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00047-4|AAA50690.1|  825|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    23   8.7  

>U00047-4|AAA50690.1|  825|Caenorhabditis elegans Hypothetical
           protein ZK418.6 protein.
          Length = 825

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +2

Query: 248 EINGVHAKS*AKAQSVLRSSISRTTLAMSIIDEESSDDEYGTHKKRR 388
           ++ GV  K  +K  S+ R S  RTT    + ++ S  +++   K+R+
Sbjct: 355 KLRGVFIKQFSKFPSIFRKSKERTTSITEVSEDHSEVEKFKPQKRRK 401


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 22.6 bits (46), Expect(2) = 8.7
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +2

Query: 83  HHHHSVKRALSSS 121
           HHHH VK   SSS
Sbjct: 97  HHHHHVKAQDSSS 109



 Score = 22.6 bits (46), Expect(2) = 8.7
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +2

Query: 239 AKLEINGVHAKS*AKAQSVLRSSISRTTLAMSIIDEESSDDEYGTHKK 382
           AK  +   H K  A++ S   SS S ++ + S      S+DE   HKK
Sbjct: 146 AKKHLKKHHKK--AESSSSSSSSSSSSSSSSSSSSSSESEDEKHHHKK 191


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,678,784
Number of Sequences: 27780
Number of extensions: 195927
Number of successful extensions: 362
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 361
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)