Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304B12f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   1.4  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   2.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.7  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   7.7  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +3

Query: 423 IPDFGYVNTFNLGPQVESLELVFYELDDEHFQ 518
           +  F Y NT+     VE   L+ Y   D+ FQ
Sbjct: 190 VQSFDYNNTWVYIADVEGYALIIYNNADDSFQ 221


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +3

Query: 282 KLSQCCEVQLVGRRS 326
           K + CC+ +++GRRS
Sbjct: 340 KQTICCKTRIIGRRS 354


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 358 IGTFFIDYTHSERRPT 311
           IG  FIDY H + + T
Sbjct: 194 IGRSFIDYVHPKDKAT 209


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 358 IGTFFIDYTHSERRPT 311
           IG  FIDY H + + T
Sbjct: 189 IGRSFIDYVHPKDKAT 204


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,408
Number of Sequences: 438
Number of extensions: 2466
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)