Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304B12f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59990.1 68418.m07523 expressed protein ; expression supporte...    28   3.3  
At5g50115.1 68418.m06206 hypothetical protein temporary automate...    28   4.4  
At4g05090.1 68417.m00756 inositol monophosphatase family protein...    27   7.7  

>At5g59990.1 68418.m07523 expressed protein ; expression supported
          by MPSS
          Length = 241

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +2

Query: 38 VRTSIISGDNCLCFFH 85
          V TSI SGDNC CF +
Sbjct: 5  VSTSITSGDNCPCFLY 20


>At5g50115.1 68418.m06206 hypothetical protein temporary automated
           functional assignment
          Length = 485

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 363 NTVHIKKEDEYRLIII*EKDIPDFGYVN 446
           NT H+  EDEY ++++    +PD  Y N
Sbjct: 252 NTTHMVNEDEYNVVVM---SVPDADYYN 276


>At4g05090.1 68417.m00756 inositol monophosphatase family protein
           low similarity to SP|Q42546 3'(2'),5'-bisphosphate
           nucleotidase (EC 3.1.3.7) (DPNPase) {Arabidopsis
           thaliana}; contains Pfam profile PF00459: Inositol
           monophosphatase family
          Length = 397

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -2

Query: 199 FSVCNRLKTW*WVLNPLDDTRPY 131
           ++ CN+  T+ WVL+P+D TR +
Sbjct: 161 YTFCNKPATY-WVLDPIDGTRGF 182


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,956,607
Number of Sequences: 28952
Number of extensions: 179248
Number of successful extensions: 373
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)