Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304B11f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po... 192 2e-50
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 192 3e-50
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 29 0.42
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc... 28 0.73
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe... 27 1.7
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 26 3.0
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c... 26 3.0
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|... 26 3.9
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 26 3.9
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr... 25 5.2
SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate synthase|Schizos... 25 6.8
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|... 25 6.8
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual 25 9.0
SPBC16E9.07 |mug100||sequence orphan|Schizosaccharomyces pombe|c... 25 9.0
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 25 9.0
>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 192 bits (469), Expect = 2e-50
Identities = 95/135 (70%), Positives = 114/135 (84%)
Frame = +1
Query: 115 SEREDNVYKAKLAEQAERYDEMVEAMKNVASRNVSDNELTVEERNLLSVAYKNVIGARRA 294
+ RED VY AKLAEQAERY+ MVE MK+VAS +D ELTVEERNLLSVAYKNVIGARRA
Sbjct: 4 TSREDAVYLAKLAEQAERYEGMVENMKSVAS---TDQELTVEERNLLSVAYKNVIGARRA 60
Query: 295 SWRIISSIEQKEETKGAEDKLNMIRAYRSQVEKELRDICSDILGVLDKYLIPSSQTGESK 474
SWRI+SSIEQKEE+KG ++ +I+ YR ++E+EL IC DIL VL+K+LIP++ + ESK
Sbjct: 61 SWRIVSSIEQKEESKGNTAQVELIKEYRQKIEQELDTICQDILTVLEKHLIPNAASAESK 120
Query: 475 VFYYKMKGDYHRYLA 519
VFYYKMKGDY+RYLA
Sbjct: 121 VFYYKMKGDYYRYLA 135
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 192 bits (468), Expect = 3e-50
Identities = 93/135 (68%), Positives = 114/135 (84%)
Frame = +1
Query: 115 SEREDNVYKAKLAEQAERYDEMVEAMKNVASRNVSDNELTVEERNLLSVAYKNVIGARRA 294
+ RE++VY AKLAEQAERY+EMVE MK VA N ++L+VEERNLLSVAYKN+IGARRA
Sbjct: 3 NSRENSVYLAKLAEQAERYEEMVENMKKVACSN---DKLSVEERNLLSVAYKNIIGARRA 59
Query: 295 SWRIISSIEQKEETKGAEDKLNMIRAYRSQVEKELRDICSDILGVLDKYLIPSSQTGESK 474
SWRIISSIEQKEE++G + +I+ YR ++E EL DIC D+L VL+K+LIP++ TGESK
Sbjct: 60 SWRIISSIEQKEESRGNTRQAALIKEYRKKIEDELSDICHDVLSVLEKHLIPAATTGESK 119
Query: 475 VFYYKMKGDYHRYLA 519
VFYYKMKGDY+RYLA
Sbjct: 120 VFYYKMKGDYYRYLA 134
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 29.1 bits (62), Expect = 0.42
Identities = 21/85 (24%), Positives = 38/85 (44%)
Frame = +1
Query: 130 NVYKAKLAEQAERYDEMVEAMKNVASRNVSDNELTVEERNLLSVAYKNVIGARRASWRII 309
N + +A+Q Y+E + + N R +S N NL +A K I + +
Sbjct: 779 NAHAYNVAKQQRAYEEEINRIWNAQKRGLSIN-------NLEELAKKYGINSIHDDYVES 831
Query: 310 SSIEQKEETKGAEDKLNMIRAYRSQ 384
+ +EET ++ L ++R YR +
Sbjct: 832 NEETTREETPSSDKVLRIVRLYRDK 856
>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
Mis17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 441
Score = 28.3 bits (60), Expect = 0.73
Identities = 23/100 (23%), Positives = 46/100 (46%)
Frame = +1
Query: 103 SSTMSEREDNVYKAKLAEQAERYDEMVEAMKNVASRNVSDNELTVEERNLLSVAYKNVIG 282
SST S N ++ Q+E Y ++ + + + ++SD E +E R V +N +
Sbjct: 45 SSTRSSPASNQQNLEIVSQSEAYHKISDLDDSTSIFSISDQENILERRISEEVVRENSV- 103
Query: 283 ARRASWRIISSIEQKEETKGAEDKLNMIRAYRSQVEKELR 402
+S +SS ET+ + + L + S +K+++
Sbjct: 104 ---SSIENVSSSAVARETQSSANILVKDNHFFSHKQKKIQ 140
>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 520
Score = 27.1 bits (57), Expect = 1.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 470 DSPVCELGMRYLSRTPRMSEQMSRSSFSTW 381
DSP +G R +S+ R + RSS S+W
Sbjct: 481 DSPTKVIGKRNVSKASRTGQGRKRSSRSSW 510
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 26.2 bits (55), Expect = 3.0
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = +1
Query: 358 NMIRAYRSQVEKELRDICSDILGVLDK 438
N +RA + +++K+L+D+ + +LDK
Sbjct: 243 NQLRADKKKLKKDLKDLVEEFQPILDK 269
>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 599
Score = 26.2 bits (55), Expect = 3.0
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = -1
Query: 425 PRMSEQMSRSSFSTWLRYALIMFNLSSAPFVSSFCSM 315
P ++E + +S S+W+ A ++ + + P V FC++
Sbjct: 121 PTIAEDFNDTSSSSWIGSAYVLASNAVLPAVGVFCNI 157
>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 25.8 bits (54), Expect = 3.9
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = -2
Query: 232 SAHCRTRCVMLHSSSPPPFRHSAQPAQLTLLYT--HYLPFPTL 110
S+H + + H P F S QLTLL + YLP P +
Sbjct: 486 SSHREKKSIYQHKEYMPDFLSSRDEFQLTLLESTWQYLPDPNV 528
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 25.8 bits (54), Expect = 3.9
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 388 EKELRDICSDILGVLDKYLIPSSQTGESKVFYY 486
E+ELRD+ G+ YL +TG +K F +
Sbjct: 215 EEELRDLFRRFGGIQRVYLAKDKETGRAKGFAF 247
>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 661
Score = 25.4 bits (53), Expect = 5.2
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = +1
Query: 133 VYKAKLAEQAE----RYDEMVEAMKNVASRNVSDNELTVEERNLLSVAYKNVIGARR 291
+YK KL E R DE+V MKN+ +N + +EL + ++N + + R
Sbjct: 202 IYKEKLRFSLESRKSRVDEIVNEMKNMCGKNPT-SELPTNYSDKTLTLWENELSSMR 257
>SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate
synthase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 584
Score = 25.0 bits (52), Expect = 6.8
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -2
Query: 136 THYLPFPTLWMTNDFTLTKS 77
T+YL FP + ND+TL+ +
Sbjct: 455 TYYLEFPGRFSVNDYTLSSN 474
>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
1|||Manual
Length = 809
Score = 25.0 bits (52), Expect = 6.8
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +1
Query: 124 EDNVYKAKLAEQAERYDEMVEAMKNVASRNV 216
ED++++ + +Q Y E +E K ++NV
Sbjct: 713 EDSMHEIAIKKQHSTYSEALEVAKKAGTKNV 743
>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 656
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = -2
Query: 97 DFTLTKSESPGHLFT 53
D T+TKS++ GH+FT
Sbjct: 385 DGTITKSDALGHMFT 399
>SPBC16E9.07 |mug100||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 313
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +1
Query: 355 LNMIRAYRSQVEKELRDICSDILGVLDKYLIP 450
LN+ R ++E D C +LG++ Y+ P
Sbjct: 234 LNLSRTATIKLESAEDDACQRVLGLIKSYMRP 265
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 24.6 bits (51), Expect = 9.0
Identities = 15/75 (20%), Positives = 33/75 (44%)
Frame = +1
Query: 97 HLSSTMSEREDNVYKAKLAEQAERYDEMVEAMKNVASRNVSDNELTVEERNLLSVAYKNV 276
H+S+ +D V + + E+ +VEA NV S + +++ + L + +
Sbjct: 649 HVSTKALRLDDVVEVSAPSVSGEKGISVVEAALNVESNAEDEEDISYRTMDQLDPNLQTL 708
Query: 277 IGARRASWRIISSIE 321
R W+ + ++E
Sbjct: 709 SKLPRTQWQTLINLE 723
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,042,155
Number of Sequences: 5004
Number of extensions: 39103
Number of successful extensions: 154
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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