Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304B10f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0682 + 24251861-24251911,24252036-24252086,24255244-242553... 56 2e-08
06_01_0311 - 2243117-2243185,2243321-2243400,2243554-2243620,224... 56 2e-08
02_02_0030 - 6207784-6208154,6208286-6211310 30 1.3
02_02_0034 - 6246183-6246553,6246672-6249699 29 1.7
02_02_0032 - 6227556-6227926,6228322-6231085 29 1.7
03_05_0511 + 25056018-25059107 29 2.3
02_01_0061 + 442288-442411,442445-445498,445630-446000 28 5.2
07_03_1555 - 27669981-27670148,27670232-27670315,27670349-276703... 27 9.1
>01_05_0682 +
24251861-24251911,24252036-24252086,24255244-24255310,
24255405-24255484,24255631-24255696
Length = 104
Score = 56.0 bits (129), Expect = 2e-08
Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Frame = +1
Query: 136 ATGLERKELLALQAGNDDPFNMKVVKKSAGTRENPTLVPSCFDARIVGCICEEHATA--I 309
ATGLER+EL A G + F+M GT+E P ++ S ++ RIVGC E +
Sbjct: 4 ATGLEREELAAELKG-EKRFDMDPPVGPFGTKEAPAVIESYYNKRIVGCPGGEGEDEHDV 62
Query: 310 TWLWLHKDQPRRCE-CGHWYKL 372
W WL KD+P C C ++ L
Sbjct: 63 VWFWLKKDEPHECPVCSQYFVL 84
>06_01_0311 -
2243117-2243185,2243321-2243400,2243554-2243620,
2245176-2245226,2245317-2245402,2245501-2245612
Length = 154
Score = 55.6 bits (128), Expect = 2e-08
Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Frame = +1
Query: 67 RSVILPTARRGYADKMMPDPLEHATGLERKELLALQAGNDDPFNMKVVKKSAGTRENPTL 246
R++ T A + D + ATGLER+E+ A G F+M GT+E P +
Sbjct: 30 RALFFSTLDAAQARTRVEDVMPIATGLEREEIAAELQGKKR-FDMDAPVGPFGTKEAPAV 88
Query: 247 VPSCFDARIVGCICEEHATA--ITWLWLHKDQPRRCE-CGHWYKL 372
+ S ++ RIVGC E + W WL K +P C C ++ L
Sbjct: 89 IQSYYNKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCTQYFSL 133
>02_02_0030 - 6207784-6208154,6208286-6211310
Length = 1131
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -3
Query: 228 GSC*LLHYLHVEGVIIAGLKGQEFL 154
G+C LL YLH+EG ++ G Q F+
Sbjct: 656 GNCVLLEYLHMEGNLLTGSIPQSFM 680
>02_02_0034 - 6246183-6246553,6246672-6249699
Length = 1132
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -3
Query: 228 GSC*LLHYLHVEGVIIAGLKGQEFL 154
G C LL YLH+EG ++ G Q F+
Sbjct: 656 GKCVLLEYLHMEGNLLTGSIPQSFM 680
>02_02_0032 - 6227556-6227926,6228322-6231085
Length = 1044
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -3
Query: 228 GSC*LLHYLHVEGVIIAGLKGQEFL 154
G C LL YLH+EG ++ G Q F+
Sbjct: 656 GKCVLLEYLHMEGNLLTGSIPQSFM 680
>03_05_0511 + 25056018-25059107
Length = 1029
Score = 29.1 bits (62), Expect = 2.3
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +2
Query: 254 PALMLVLLDAFVKNTLQPSPGFGYTRTNRAVASVDIGTN*LRSHS 388
P L+L LD + L +P YTR +R ++ V+ + LRSHS
Sbjct: 130 PCLVLNKLDRLISE-LHLTPAEAYTRLHRIISDVNSIHSALRSHS 173
>02_01_0061 + 442288-442411,442445-445498,445630-446000
Length = 1182
Score = 27.9 bits (59), Expect = 5.2
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 228 GSC*LLHYLHVEGVIIAGLKGQEFL 154
G C LL YLH+EG ++ G + F+
Sbjct: 707 GKCVLLEYLHMEGNLLTGSIPRSFM 731
>07_03_1555 - 27669981-27670148,27670232-27670315,27670349-27670360,
27670683-27670761,27670840-27671078,27671167-27671260,
27671342-27671484,27671688-27671786,27671870-27671998,
27672123-27672197,27672308-27672520,27672581-27672676,
27673282-27673380,27673600-27673839,27674212-27674322,
27674429-27674626,27674720-27674835,27675076-27675193,
27675761-27675866,27675972-27676030,27676259-27676388,
27676730-27676887,27677672-27677887,27677972-27678082,
27678313-27678472,27679364-27679509,27679603-27679695,
27680610-27680706,27681224-27681294,27681407-27681505,
27682037-27682168,27682287-27682729,27683252-27683564,
27684301-27684549
Length = 1631
Score = 27.1 bits (57), Expect = 9.1
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = -1
Query: 311 VMAVACSSQMHPTIRASKQEGTRVGFSRVPADFFTTFMLKGSSLPA*RARSSF 153
VMA C + P AS++E R F VP D F+ + A A+ F
Sbjct: 1241 VMARICHTNNCPVGVASQREELRARFPGVPGDLVNYFLFVAEEVRATLAQLGF 1293
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,734,976
Number of Sequences: 37544
Number of extensions: 363323
Number of successful extensions: 816
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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