Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304B10f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25815| Best HMM Match : No HMM Matches (HMM E-Value=.)              73   1e-13
SB_20260| Best HMM Match : fn3 (HMM E-Value=0)                         33   0.19 
SB_58178| Best HMM Match : UBACT (HMM E-Value=1.7e-34)                 31   0.44 
SB_1442| Best HMM Match : SRCR (HMM E-Value=0)                         30   1.3  
SB_50828| Best HMM Match : IspA (HMM E-Value=0.88)                     29   2.3  
SB_34546| Best HMM Match : Sec20 (HMM E-Value=9.2)                     29   2.3  
SB_23135| Best HMM Match : TM_helix (HMM E-Value=0.84)                 29   3.1  
SB_59549| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_50057| Best HMM Match : NACHT (HMM E-Value=1.4e-08)                 28   4.1  
SB_45122| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_35819| Best HMM Match : BSD (HMM E-Value=0.86)                      28   4.1  
SB_13374| Best HMM Match : Cornifin (HMM E-Value=0.34)                 28   4.1  
SB_59600| Best HMM Match : DNA_pol_B_2 (HMM E-Value=1.5e-05)           27   9.4  
SB_6150| Best HMM Match : GAT (HMM E-Value=2.3e-34)                    27   9.4  
SB_56370| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_25815| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 66

 Score = 73.3 bits (172), Expect = 1e-13
 Identities = 27/50 (54%), Positives = 40/50 (80%)
 Frame = +1

Query: 223 GTRENPTLVPSCFDARIVGCICEEHATAITWLWLHKDQPRRCECGHWYKL 372
           GT++NPT+VPS ++ RIVGC+CEE AT I W+ L    P+RC+CG++++L
Sbjct: 7   GTKDNPTIVPSGYEERIVGCVCEEDATMIRWMLLKAGPPQRCDCGNYFQL 56


>SB_20260| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 1428

 Score = 32.7 bits (71), Expect = 0.19
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = +1

Query: 85  TARRGYADKMMPDPLEHATGLERKELLALQAGNDDPFNMKVVK 213
           T++RG   +M+PD +  A GL R +L AL  G D  +N+   K
Sbjct: 814 TSQRGLVTRMLPDIITSACGLCRDQLTALDLG-DPQYNLTSFK 855


>SB_58178| Best HMM Match : UBACT (HMM E-Value=1.7e-34)
          Length = 1236

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
 Frame = +1

Query: 196  NMKVVKKSAGTRENPTLVPSCFDARIV----GCICEEHATAI 309
            N  + +K +GT  NPT  PSC D R++    GC+  +HA  +
Sbjct: 892  NPALPQKQSGTTGNPTPSPSCNDLRVIIHVEGCV-HQHALLV 932


>SB_1442| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 2103

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
 Frame = -1

Query: 383 GFSINLYQCPHSQRRGWSL--CNQSQVMAVACSSQMHPTIRASKQEGTRVGFSRVPADFF 210
           G   +L  CPH    GW +  CN S  + + CS+   P I     +G      RV   F 
Sbjct: 753 GNESSLADCPHD---GWGVHSCNHSNDVVLFCSNTSGPDIEVRLSDGNSPAEGRVEV-FH 808

Query: 209 TTF 201
           T F
Sbjct: 809 TGF 811


>SB_50828| Best HMM Match : IspA (HMM E-Value=0.88)
          Length = 245

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 34  LCRQILRANAFRSVILPTARRGYADKMMP 120
           +CR+ILR + F + +L  AR+ Y +  +P
Sbjct: 206 ICREILRRSLFLTSLLDAARKTYLETCLP 234


>SB_34546| Best HMM Match : Sec20 (HMM E-Value=9.2)
          Length = 214

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 34  LCRQILRANAFRSVILPTARRGYADKMMP 120
           +CR+ILR + F + +L  AR+ Y +  +P
Sbjct: 48  ICREILRRSLFLTSLLDAARKTYLETCLP 76


>SB_23135| Best HMM Match : TM_helix (HMM E-Value=0.84)
          Length = 346

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -1

Query: 320 QSQVMAVACSSQMHPTIRASKQEGTR 243
           QSQV+A A S  + P + ASK EG R
Sbjct: 210 QSQVLAQAKSQVVPPIVNASKDEGKR 235


>SB_59549| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2631

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 218  QQEPVKTQLWYLPALMLVLLDAFVKNTLQ 304
            Q E + +QLW++ ALM  LLD  V   L+
Sbjct: 1749 QYEIMMSQLWFVTALMAFLLDFLVMQPLR 1777


>SB_50057| Best HMM Match : NACHT (HMM E-Value=1.4e-08)
          Length = 1555

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/51 (23%), Positives = 25/51 (49%)
 Frame = +1

Query: 151 RKELLALQAGNDDPFNMKVVKKSAGTRENPTLVPSCFDARIVGCICEEHAT 303
           ++E+++    N +    KV +   G +EN   + S      + C+CE++ T
Sbjct: 202 KEEIISTSEKNTEKIVSKVSEVETGLKENTEKIVSKLSHTSLKCLCEKYTT 252


>SB_45122| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 119

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = -2

Query: 280 IQQYEHQSRKVPELGFHGFLLTSSLPSC*RGHHCRPEGPGVPSFPSQWHV 131
           +Q Y    R+ P L  H  L  + L SC     C PE   + S+   WH+
Sbjct: 34  VQGYHGCQRRTPSLVSHRHLFVALLSSCRYKATCGPETSSLVSY---WHL 80


>SB_35819| Best HMM Match : BSD (HMM E-Value=0.86)
          Length = 260

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 218 QQEPVKTQLWYLPALMLVLLDAFVKNTLQ 304
           Q E + +QLW++ ALM  LLD  V   L+
Sbjct: 86  QYEIMMSQLWFVTALMAFLLDFLVMQPLR 114


>SB_13374| Best HMM Match : Cornifin (HMM E-Value=0.34)
          Length = 1197

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = -2

Query: 187 HHCRPEGPGVPSFPSQWHVPRDQASFC 107
           H C P GPG PS P     P    + C
Sbjct: 69  HECHPRGPGRPSSPGNPPRPNRVVTIC 95


>SB_59600| Best HMM Match : DNA_pol_B_2 (HMM E-Value=1.5e-05)
          Length = 1119

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +1

Query: 238 PTLVPSCFDARIVGCICEEHATAITWLWLHKDQPRRCECGH 360
           PT+ P C D    GC   +   A T  W H +  +  E G+
Sbjct: 770 PTMSPLCRDGGQGGCNHSDEERAFTGTWCHPEIFKALEEGY 810


>SB_6150| Best HMM Match : GAT (HMM E-Value=2.3e-34)
          Length = 674

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 491 ITANNRQALSRDNHDAFCFGCNT 423
           I+ ++R+AL R     FC GC T
Sbjct: 508 ISCSSREALKRKASSCFCHGCGT 530


>SB_56370| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 548

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 389 RSGFSINLYQCPHSQRRGW 333
           R  F +  Y CP S RRGW
Sbjct: 506 RCSFFLARYLCPRSPRRGW 524


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,074,009
Number of Sequences: 59808
Number of extensions: 412778
Number of successful extensions: 902
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)