Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304B08f
         (521 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9VI10 Cluster: Probable small nuclear ribonucleoprotei...    36   0.43 
UniRef50_Q9JRS0 Cluster: Orf5 protein; n=1; Aggregatibacter acti...    32   6.9  
UniRef50_A6L4H4 Cluster: Putative uncharacterized protein; n=1; ...    32   9.2  

>UniRef50_Q9VI10 Cluster: Probable small nuclear ribonucleoprotein
           Sm D2; n=32; Eukaryota|Rep: Probable small nuclear
           ribonucleoprotein Sm D2 - Drosophila melanogaster (Fruit
           fly)
          Length = 119

 Score = 36.3 bits (80), Expect = 0.43
 Identities = 17/17 (100%), Positives = 17/17 (100%)
 Frame = -2

Query: 520 DSVILVLRNPLATAAGK 470
           DSVILVLRNPLATAAGK
Sbjct: 103 DSVILVLRNPLATAAGK 119


>UniRef50_Q9JRS0 Cluster: Orf5 protein; n=1; Aggregatibacter
           actinomycetemcomitans|Rep: Orf5 protein - Actinobacillus
           actinomycetemcomitans (Haemophilusactinomycetemcomitans)
          Length = 431

 Score = 32.3 bits (70), Expect = 6.9
 Identities = 18/56 (32%), Positives = 32/56 (57%)
 Frame = +1

Query: 274 LIQFQYIKISSLFFYYIELQNQRTNTVLKVIQFCKTVLLQFKE*TSKLLISWIFLF 441
           +I F ++ + S  FY+ E+ N+ T+ +LKV+ F   V+ Q     S  L ++ F+F
Sbjct: 358 IIYFGWVGLFSFMFYHCEINNKITSKILKVL-FVFLVVSQITYVDSVYLYNFWFVF 412


>UniRef50_A6L4H4 Cluster: Putative uncharacterized protein; n=1;
           Bacteroides vulgatus ATCC 8482|Rep: Putative
           uncharacterized protein - Bacteroides vulgatus (strain
           ATCC 8482 / DSM 1447 / NCTC 11154)
          Length = 369

 Score = 31.9 bits (69), Expect = 9.2
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
 Frame = +1

Query: 289 YIKISSLFFYYIELQNQRTNTVLKVIQFCKTVLLQFKE*TSKLLISWIFLFI--NT*TNY 462
           Y  I S++F+ IEL +++TN VLK+   C   L+ +          WIFL++  NT   Y
Sbjct: 312 YFYILSIYFFSIELSSKKTNPVLKI--GCILYLMAY----------WIFLYVVKNTSETY 359

Query: 463 CITS 474
             TS
Sbjct: 360 PYTS 363


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 455,561,570
Number of Sequences: 1657284
Number of extensions: 8292208
Number of successful extensions: 16556
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16555
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32619212418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)