Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304B08f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1156 - 30814037-30814190,30814277-30815166                       31   0.42 
08_02_0459 + 17420156-17420976,17422291-17424199                       27   6.9  

>03_05_1156 - 30814037-30814190,30814277-30815166
          Length = 347

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +1

Query: 268 VNLIQFQYIKISSLFFYYI--ELQNQRTNTVLKVIQFC 375
           V L+ F Y+ +  L FY +  E+  +RTN VL  + FC
Sbjct: 67  VGLLLFIYLLVGVLAFYAVMDEISGKRTNRVLDALYFC 104


>08_02_0459 + 17420156-17420976,17422291-17424199
          Length = 909

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 89  NIFKETWQNYNGQEVHKPVNKFIISI 12
           N+ +   QNYNG  VH  V  FIIS+
Sbjct: 479 NLLQLEKQNYNGCRVHDTVLDFIISM 504


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,257,033
Number of Sequences: 37544
Number of extensions: 190694
Number of successful extensions: 320
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 320
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)