Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304B08f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18906| Best HMM Match : LSM (HMM E-Value=3.2e-15)                   30   1.0  
SB_13309| Best HMM Match : EGF (HMM E-Value=0)                         29   2.3  
SB_33872| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  

>SB_18906| Best HMM Match : LSM (HMM E-Value=3.2e-15)
          Length = 443

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 14/14 (100%), Positives = 14/14 (100%)
 Frame = -2

Query: 520 DSVILVLRNPLATA 479
           DSVILVLRNPLATA
Sbjct: 94  DSVILVLRNPLATA 107


>SB_13309| Best HMM Match : EGF (HMM E-Value=0)
          Length = 718

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 155 WYVRPLKLFYANINNDTGETLLMHHYNN*SFLALSYNR 268
           W  +  KL+ A+ N D  + LL H Y++  +  +SYNR
Sbjct: 302 WCGKSGKLYKADFNGDGEDDLLCHRYSD-GYKWISYNR 338


>SB_33872| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 716

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 20/70 (28%), Positives = 32/70 (45%)
 Frame = +1

Query: 289 YIKISSLFFYYIELQNQRTNTVLKVIQFCKTVLLQFKE*TSKLLISWIFLFINT*TNYCI 468
           Y  +   F++Y +  + R   +  V QFC  +L++  +     LI +     NT  N  +
Sbjct: 476 YHTLHETFYWYKKFLDPRFELLRSVTQFCGLLLMRLSD---SPLIPFTLTPYNTIVNRYL 532

Query: 469 TSLQL*QEDS 498
            SLQL  E S
Sbjct: 533 ASLQLNAEVS 542


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,910,838
Number of Sequences: 59808
Number of extensions: 249630
Number of successful extensions: 407
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)