Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304B07f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3B8.02 |php5||CCAAT-binding factor complex subunit Php5|Schi... 36 0.005
SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa... 31 0.14
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 30 0.18
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 30 0.24
SPAC17H9.16 |tom22||mitochondrial TOM complex subunit Tom22|Schi... 27 1.3
SPAC56F8.05c |mug64||conserved fungal protein|Schizosaccharomyce... 27 1.3
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 27 2.2
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo... 27 2.2
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 27 2.2
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 26 3.0
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe... 26 3.9
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 26 3.9
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch... 26 3.9
SPAC27D7.12c |but1|SPAC27D7.12, mug107|neddylation pathway prote... 25 6.8
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 6.8
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 6.8
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 25 9.0
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ... 25 9.0
SPAC11D3.18c |||nicotinic acid plasma membrane transporter |Schi... 25 9.0
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 25 9.0
SPBC30D10.02 |||transcription corepressor |Schizosaccharomyces p... 25 9.0
>SPBC3B8.02 |php5||CCAAT-binding factor complex subunit
Php5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 415
Score = 35.5 bits (78), Expect = 0.005
Identities = 16/38 (42%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Frame = +3
Query: 411 EVIRSTKLPIARIKNIMKMDPDV--NIVSSDAVFLVTK 518
+ +++ LP+ARIK +MK D DV ++S++A FL K
Sbjct: 102 QAVKTLHLPLARIKKVMKTDDDVKNKMISAEAPFLFAK 139
>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 199
Score = 30.7 bits (66), Expect = 0.14
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +3
Query: 393 EKKQKTEVIRSTKLPIARIKNIMKMDPDVNIVSSDAVFLVTKA 521
E K ++ P+ARIK IM+ D DV V+ +++KA
Sbjct: 11 ETKPNPATYWKSRFPVARIKKIMQADQDVGKVAQVTPVIMSKA 53
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 30.3 bits (65), Expect = 0.18
Identities = 14/73 (19%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Frame = +3
Query: 222 LQNMSEEECHEDVDISDITEHSES---YLENEHLKFALTEATEADNNKLEFELNSEEQVH 392
++ ++E H+ DI D+ + + +++N HL + + ++FE+ E VH
Sbjct: 2007 IERCNKEGVHDVFDIIDLDDEKRTELLHMDNAHLAKCAEFINKYPDIDIDFEIEDSEDVH 2066
Query: 393 EKKQKTEVIRSTK 431
+++ T+
Sbjct: 2067 ANSPSVLIVQLTR 2079
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 29.9 bits (64), Expect = 0.24
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = +3
Query: 258 VDISDITEHSESYLEN--EHLKFALTEATEADNNKLE 362
VD++D+T H + L+N E L F+ E ++ D N+ E
Sbjct: 31 VDVADVTTHVDEDLDNKEEALDFSEDELSDLDENQFE 67
>SPAC17H9.16 |tom22||mitochondrial TOM complex subunit
Tom22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 144
Score = 27.5 bits (58), Expect = 1.3
Identities = 11/49 (22%), Positives = 28/49 (57%)
Frame = +3
Query: 252 EDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNSEEQVHEK 398
E VD +++ ++ +E + +A + E+D+++ +FE EE + ++
Sbjct: 6 EVVDETEVQNEQQTVIEKDQYIYAQEDVEESDSDESDFEGLEEETIIDR 54
>SPAC56F8.05c |mug64||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 295
Score = 27.5 bits (58), Expect = 1.3
Identities = 20/64 (31%), Positives = 28/64 (43%)
Frame = +3
Query: 306 EHLKFALTEATEADNNKLEFELNSEEQVHEKKQKTEVIRSTKLPIARIKNIMKMDPDVNI 485
EH K A+ A + N +E EQ+ K T+++RS IKN +K D
Sbjct: 235 EHCKSAVRSAEDELNGAIEHAKILYEQILNKDYNTDLLRSI------IKNQLKFHQDAAA 288
Query: 486 VSSD 497
SD
Sbjct: 289 ALSD 292
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 26.6 bits (56), Expect = 2.2
Identities = 19/78 (24%), Positives = 37/78 (47%)
Frame = +3
Query: 180 RKRLLLHRKYKPSSLQNMSEEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKL 359
+K+ + + S ++ EEE E + S++++ SES E+E E +E++
Sbjct: 71 KKKAVAASEDSESDSESSEEEEETESEEDSEVSDESESESESES---ESEEESESEEESD 127
Query: 360 EFELNSEEQVHEKKQKTE 413
E E + +K +K E
Sbjct: 128 ESERSGPSSFLKKPEKEE 145
>SPBC1718.02 |hop1||linear element associated protein
Hop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 26.6 bits (56), Expect = 2.2
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +1
Query: 91 FILRLSKITLSAYY*LSSACKTILARRYILEKDYYYTVNINLHRYKIC 234
F L K+ + Y +SS CK+IL + ++ + +T+N KIC
Sbjct: 86 FSLVSMKVPFTVYLIISSQCKSILEDDAVEKEIFSFTINPGSEE-KIC 132
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 26.6 bits (56), Expect = 2.2
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Frame = +3
Query: 216 SSLQNMSEEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNSEEQVHE 395
SS N+S ++ + I+ +T++ + Y+E HL+F + L L S
Sbjct: 132 SSNPNISRKQSFIEYLIAKLTDNIQIYIERIHLRFEDNLSDLEKPYSLGLTLYSLRVTST 191
Query: 396 KKQKTEVIRST-KLPIARIKNIMKMD 470
TE + ST +P + I I+ +D
Sbjct: 192 DASFTEYLLSTDPIPSSCIHKIITVD 217
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 26.2 bits (55), Expect = 3.0
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +3
Query: 264 ISDITEHSESYLENEHLKFALTEATEADNNKLEF 365
I+ I +HS SY + + E D NKL F
Sbjct: 215 IASILQHSNSYFDQHTISSITDERDLEDKNKLPF 248
>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 959
Score = 25.8 bits (54), Expect = 3.9
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Frame = +3
Query: 237 EEECHEDVDISDITEHSESYL-------ENEHLKFALTEATEADNNKLEFELNSEEQVHE 395
+E+ E++D +I E S+ + +NE L+ L + E + K++ E +SEE++
Sbjct: 690 DEDDFEEIDTDEIEEQSDWEMISNQDASDNEELERKLDKVLEDADAKVKDEESSEEELMN 749
Query: 396 KKQ 404
+Q
Sbjct: 750 DEQ 752
>SPAC343.11c |msc1||multi-copy suppressor of Chk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1588
Score = 25.8 bits (54), Expect = 3.9
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +3
Query: 210 KPSSLQNMSEEECHED--VDISDITEHSESYLENEHLKFALTEATEADN 350
K SS +N S E E VD ++ HS + E EH K + + + N
Sbjct: 3 KNSSHENQSSENIIEFPYVDFEELNVHSNIFSELEHAKPSTQQQQQQQN 51
>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 747
Score = 25.8 bits (54), Expect = 3.9
Identities = 14/64 (21%), Positives = 31/64 (48%)
Frame = +3
Query: 234 SEEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNSEEQVHEKKQKTE 413
SE E ++D SDI + + LE + + + + N+K + +++ + E +
Sbjct: 182 SESEASLEID-SDIKDEKQKSLEEQKIAPEIPVKQQIKNDKEALGIQAQQLLEEPVENLH 240
Query: 414 VIRS 425
+IR+
Sbjct: 241 LIRN 244
>SPAC27D7.12c |but1|SPAC27D7.12, mug107|neddylation pathway protein
But1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 243
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 339 EADNNKLEFELNSEEQVHEKKQKTEVIRSTK 431
E D N +F +++ + VHE K T ++STK
Sbjct: 2 EIDQNLFQFPISTRDAVHE-KNCTLRVKSTK 31
>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 780
Score = 25.0 bits (52), Expect = 6.8
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 207 YKPSSLQNMSEEECHEDVDI 266
Y+PSSLQ + + H VD+
Sbjct: 314 YQPSSLQPLESRKLHSKVDV 333
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.0 bits (52), Expect = 6.8
Identities = 17/56 (30%), Positives = 33/56 (58%)
Frame = +3
Query: 345 DNNKLEFELNSEEQVHEKKQKTEVIRSTKLPIARIKNIMKMDPDVNIVSSDAVFLV 512
+NN L+ + +S+ ++EK + ++ T L I R NI++ DP V D+++L+
Sbjct: 945 ENNDLKSKFSSD--MYEKLRG--FLKPTNLTIQR--NIIEFDPPVYRKKEDSIYLL 994
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 24.6 bits (51), Expect = 9.0
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Frame = +3
Query: 216 SSLQNMSEEECHEDVDISDITEHSESYLENEHLKFALTEATEADN-NKLE------FELN 374
S LQN SEE + S + ++ SY +++ LK T + KL+ ELN
Sbjct: 544 SHLQNFSEELLKKRKLFSSLFSNNVSYKKSKKLKRTHTVHDKCQKVAKLDHYIRDNIELN 603
Query: 375 SEEQVHEKKQKTEVIRSTKLPIAR 446
S+E+ H+ + T + I +
Sbjct: 604 SKEREHDCYEGTLAVPQVNTEIRK 627
>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3
Query: 339 EADNNKLEFELNSEEQVHEKKQKTEVIRSTKLPIARIK 452
+ D + EF SEE +++ + TKL IAR+K
Sbjct: 371 DVDERRREFPNASEEHTNKEAYLLPHLFRTKLGIARLK 408
>SPAC11D3.18c |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 240 LQTYFVTMKVYIYGVIIVFF 181
LQT ++T+ VYI GVI F
Sbjct: 322 LQTNYMTIPVYIAGVISFLF 341
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 24.6 bits (51), Expect = 9.0
Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Frame = +3
Query: 204 KYKPSSLQNMSEEECHEDVDISDITEHSESYLENEHLKFALTEAT---EADNNKLEFELN 374
K K S ++ +EE + IS E +++ E + ++++ EAT NK + E+
Sbjct: 537 KAKVSEIRKAYDEELAKAKQISLDIETNKAQTEQVNREYSILEATLNALQKQNKQKGEV- 595
Query: 375 SEEQVHEKKQKTEVIRSTKLPIARIKN 455
E+ V E + ++ S+ I ++K+
Sbjct: 596 LEQVVAESEAAKNMVESSNASIQQLKS 622
>SPBC30D10.02 |||transcription corepressor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 161
Score = 24.6 bits (51), Expect = 9.0
Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Frame = +3
Query: 234 SEEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNSEEQVHEKKQ--- 404
+ E C ++ + EH LEN K + EA E E + N E++ + +Q
Sbjct: 54 ANEICEKEAKKTIAAEHIIKALENLEFKEYIAEALEVAAEHKEQQKNREKKSSKFEQSGV 113
Query: 405 -KTEVIRSTKLPIARIKNIMK 464
+ E++R + ++R + K
Sbjct: 114 SRDELLRQQEELLSRARERFK 134
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,720,252
Number of Sequences: 5004
Number of extensions: 30043
Number of successful extensions: 142
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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