Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304B07f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_57900| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 3e-07
SB_49434| Best HMM Match : CBFD_NFYB_HMF (HMM E-Value=3.6e-08) 35 0.035
SB_16496| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.11
SB_36640| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.14
SB_33336| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.25
SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45) 32 0.25
SB_34924| Best HMM Match : Vicilin_N (HMM E-Value=4.5) 32 0.33
SB_12411| Best HMM Match : Vicilin_N (HMM E-Value=4.5) 32 0.33
SB_36081| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.44
SB_29594| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.4e-06) 31 0.58
SB_3487| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_47052| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_14358| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_38795| Best HMM Match : M (HMM E-Value=2.4e-07) 29 3.1
SB_8368| Best HMM Match : VWA (HMM E-Value=0) 28 4.1
SB_4664| Best HMM Match : DSPc (HMM E-Value=7.2) 28 4.1
SB_23388| Best HMM Match : ParBc (HMM E-Value=0.3) 28 4.1
SB_53565| Best HMM Match : Amino_oxidase (HMM E-Value=9.7e-19) 28 5.4
SB_33134| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_49900| Best HMM Match : GETHR (HMM E-Value=5e-18) 27 7.1
SB_36579| Best HMM Match : C1_1 (HMM E-Value=0.00011) 27 7.1
SB_14879| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_11244| Best HMM Match : M (HMM E-Value=2.5e-08) 27 7.1
SB_8972| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_27766| Best HMM Match : Exo_endo_phos (HMM E-Value=0.26) 27 9.4
SB_59666| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_58665| Best HMM Match : TSP_1 (HMM E-Value=7.5e-10) 27 9.4
>SB_57900| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 114
Score = 52.0 bits (119), Expect = 3e-07
Identities = 25/64 (39%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Frame = +3
Query: 333 ATEADNNKLEFELNSEEQVHEKKQKTEV-IRSTKLPIARIKNIMKMDPDVNIVSSDAVFL 509
A E++N + + N++E++H Q+ E R T+ P R++N+MK+DPD+ + + +AVFL
Sbjct: 3 AEESEN--MATQDNNDEELHPATQEEEKPSRMTQFPQTRVRNMMKLDPDLQLANKEAVFL 60
Query: 510 VTKA 521
VT+A
Sbjct: 61 VTRA 64
>SB_49434| Best HMM Match : CBFD_NFYB_HMF (HMM E-Value=3.6e-08)
Length = 120
Score = 35.1 bits (77), Expect = 0.035
Identities = 12/32 (37%), Positives = 25/32 (78%)
Frame = +3
Query: 426 TKLPIARIKNIMKMDPDVNIVSSDAVFLVTKA 521
T+LP+++IK I+K PD+ +S +++FL+ ++
Sbjct: 14 TQLPLSKIKTILKSSPDLANISQESLFLIARS 45
>SB_16496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1275
Score = 33.5 bits (73), Expect = 0.11
Identities = 23/78 (29%), Positives = 36/78 (46%)
Frame = +3
Query: 252 EDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNSEEQVHEKKQKTEVIRSTK 431
E +++ E +S+ ENE L ++ +E DN + N+ E V E K +
Sbjct: 915 ESTEVAAFGEEVQSFSENETLCVSIKPDSEGDNEEHTNGNNNAETV-EHKNADMACSQPE 973
Query: 432 LPIARIKNIMKMDPDVNI 485
L A K+I K P+V I
Sbjct: 974 LTKAEDKSIAKRKPEVTI 991
>SB_36640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 283
Score = 33.1 bits (72), Expect = 0.14
Identities = 20/67 (29%), Positives = 32/67 (47%)
Frame = +3
Query: 213 PSSLQNMSEEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNSEEQVH 392
P+S+ EEE E+V+ + E E E E + E E + K E E EE+
Sbjct: 190 PASVVEEEEEEEEEEVEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEEEEEEEEE 249
Query: 393 EKKQKTE 413
E++++ E
Sbjct: 250 EEEEEEE 256
>SB_33336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 309
Score = 32.3 bits (70), Expect = 0.25
Identities = 18/67 (26%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Frame = +3
Query: 234 SEEECHED----VDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNSEEQVHEKK 401
+EE+ H++ +D S++TE + EN+ L+ T+ TE + ++ +E V+ ++
Sbjct: 172 AEEKYHKNNENVLDASELTEREQKQTENDQLEDKTTQTTETPQKPKQHDV-AETNVNTRR 230
Query: 402 QKTEVIR 422
+K E R
Sbjct: 231 RKKENAR 237
>SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)
Length = 4160
Score = 32.3 bits (70), Expect = 0.25
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Frame = +3
Query: 252 EDVDISD--ITEH-SESYLENEHLKFALTEATEADNNKLEFELNSE-EQVHEKKQKTEVI 419
ED++I + H +E E LK L +A E D +L+ E+ S EQ+HE + EVI
Sbjct: 2514 EDLEIERDRVKRHLAELTAEKNTLKTRL-DARELDIVRLQSEVKSSVEQLHEVRTHVEVI 2572
Query: 420 RSTKLPIARIKNIMK 464
R+ + ++ KN ++
Sbjct: 2573 RTENVSSSKDKNFIE 2587
>SB_34924| Best HMM Match : Vicilin_N (HMM E-Value=4.5)
Length = 206
Score = 31.9 bits (69), Expect = 0.33
Identities = 22/110 (20%), Positives = 48/110 (43%), Gaps = 1/110 (0%)
Frame = +3
Query: 180 RKRLLLHRKYKPSSLQNMSEEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKL 359
RKR++ RK+ QN EE +TE + L +
Sbjct: 67 RKRIITARKHLQGEEQNNEEERSRRP---RVLTEEQRARQRQRDLVLTEEQRVRKRQTSS 123
Query: 360 EFELNSEEQVHEKKQKTEV-IRSTKLPIARIKNIMKMDPDVNIVSSDAVF 506
E+ L+ E++V +K++ ++ + + R +N+ K++ +++ D++F
Sbjct: 124 EYRLSGEQRVRKKQKDSKYELDDEQRASKRQRNLEKLNAQRTMMAEDSLF 173
>SB_12411| Best HMM Match : Vicilin_N (HMM E-Value=4.5)
Length = 167
Score = 31.9 bits (69), Expect = 0.33
Identities = 22/110 (20%), Positives = 48/110 (43%), Gaps = 1/110 (0%)
Frame = +3
Query: 180 RKRLLLHRKYKPSSLQNMSEEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKL 359
RKR++ RK+ QN EE +TE + L +
Sbjct: 28 RKRIITARKHLQGEEQNNEEERSRRP---RVLTEEQRARQRQRDLVLTEEQRVRKRQTSS 84
Query: 360 EFELNSEEQVHEKKQKTEV-IRSTKLPIARIKNIMKMDPDVNIVSSDAVF 506
E+ L+ E++V +K++ ++ + + R +N+ K++ +++ D++F
Sbjct: 85 EYRLSGEQRVRKKQKDSKYELDDEQRASKRQRNLEKLNAQRTMMAEDSLF 134
>SB_36081| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 424
Score = 31.5 bits (68), Expect = 0.44
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +3
Query: 198 HRKYKPSSLQNMSEEECHEDVDISDITEHSESYLENEHLKFALTE 332
H+K K S + EE E+ DIS + E+ E + + K A TE
Sbjct: 377 HKKEKKSKKEKTKTEESDEEADISAVLENGEKKKKKKKKKKAKTE 421
>SB_29594| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.4e-06)
Length = 1292
Score = 31.1 bits (67), Expect = 0.58
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = +3
Query: 252 EDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNSEEQVHEKKQKTE 413
ED +S+ T E+ EN LK + DN L +L+S Q+H+K + E
Sbjct: 514 EDNSLSE-TSQMENLRENLKLKQMTVQQLNKDNEALREKLSSSVQIHDKVAELE 566
>SB_3487| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 113
Score = 30.7 bits (66), Expect = 0.76
Identities = 15/44 (34%), Positives = 29/44 (65%)
Frame = +3
Query: 330 EATEADNNKLEFELNSEEQVHEKKQKTEVIRSTKLPIARIKNIM 461
+A + DN+K+ +L+S E V E+K +TE+ +S ++KN++
Sbjct: 59 KALKEDNDKMSQDLSSLE-VLEQKSETEIRKSAPFATNKVKNLI 101
>SB_47052| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 516
Score = 29.1 bits (62), Expect = 2.3
Identities = 23/76 (30%), Positives = 34/76 (44%)
Frame = +3
Query: 180 RKRLLLHRKYKPSSLQNMSEEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKL 359
R LL++ KY+ S++ M +E H + + T H ES + L L E N L
Sbjct: 241 RPNLLINAKYEQSAMSMMIGKEAHFIAILREPTTHFESAFYSYRLDALL--GLENATNPL 298
Query: 360 EFELNSEEQVHEKKQK 407
+ L S + EK K
Sbjct: 299 QAFLTSPHEHVEKYLK 314
>SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 950
Score = 28.7 bits (61), Expect = 3.1
Identities = 27/101 (26%), Positives = 44/101 (43%)
Frame = +3
Query: 195 LHRKYKPSSLQNMSEEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELN 374
L R KP + SEEE E+ + + TE + + LK TE + D+ L E +
Sbjct: 636 LPRTKKPEKEEEESEEESEEESEEEEETEK----VNKDALKAKATEKSN-DSLCLSEEES 690
Query: 375 SEEQVHEKKQKTEVIRSTKLPIARIKNIMKMDPDVNIVSSD 497
EE+ E+ ++ E + A+I + + V V D
Sbjct: 691 EEEESEEESEEDEEEGAKPSASAKIAKTSETENKVPKVDKD 731
>SB_14358| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 28.7 bits (61), Expect = 3.1
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Frame = -3
Query: 402 VSSHVLVPQSLVQILVCYYLLL*PPSV--QI*DVHFLDKIPNAL*YLKCRHLRGILLQTY 229
V H+++P + + LVC ++ L P++ + VH IPN + L C H+R I+
Sbjct: 40 VHVHLIIP-NFIAPLVCVHVHLIIPNMITPLVCVHVHLIIPNLIALLVCVHVRLIIPNMI 98
Query: 228 FVTMKVYIYGVI 193
+ M V+++ +I
Sbjct: 99 TLLMCVHVHLII 110
>SB_38795| Best HMM Match : M (HMM E-Value=2.4e-07)
Length = 1447
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/51 (29%), Positives = 31/51 (60%)
Frame = +3
Query: 219 SLQNMSEEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFEL 371
S++ + ++ E +++ + H L +E + ALT+ TEA+N++L+ EL
Sbjct: 269 SVEQLRKQHAEEMIEVENYVSHIRQ-LSDE--REALTQDTEAENDQLKAEL 316
>SB_8368| Best HMM Match : VWA (HMM E-Value=0)
Length = 771
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +3
Query: 405 KTEVIRSTKLPIARIKNIMKMDPDVNIVSSDAVFLVT 515
K + +R ++ +AR++ KM PDV +VS A+ L T
Sbjct: 73 KRQGLRPSEDFVARLRTSAKMTPDVRLVSGVALMLRT 109
>SB_4664| Best HMM Match : DSPc (HMM E-Value=7.2)
Length = 247
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 267 SDITEHSESYLENEHLKFALTEATEADNNK 356
SD T +S+ ENE L F + TE DN +
Sbjct: 107 SDATADVQSFSENETLCFTIKPDTEGDNKR 136
>SB_23388| Best HMM Match : ParBc (HMM E-Value=0.3)
Length = 1168
Score = 28.3 bits (60), Expect = 4.1
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Frame = +3
Query: 237 EEECHEDVDISDITEHSESYLENEHLKFALTEATEADN-NKLEFE----LNSEEQVHEKK 401
E+E ++VD+ + H S LE HLK E D+ N + FE L +E ++ +KK
Sbjct: 648 EDEETDEVDVLEEQRHRISSLEG-HLKLVEKARLEDDDRNNINFEEYKRLRNELEILKKK 706
Query: 402 QKTEVIRSTKL 434
+ E ++ +
Sbjct: 707 RAQEELQEAMM 717
>SB_53565| Best HMM Match : Amino_oxidase (HMM E-Value=9.7e-19)
Length = 438
Score = 27.9 bits (59), Expect = 5.4
Identities = 20/72 (27%), Positives = 35/72 (48%)
Frame = +3
Query: 234 SEEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNSEEQVHEKKQKTE 413
+EEE E+ + + E E E E E + + + E E EE+ E++++ E
Sbjct: 31 AEEEEEEEEEEEEEEEEEEEEEEEEE------EEEDKEEEEEEEEEEEEEEEEEEEEEEE 84
Query: 414 VIRSTKLPIARI 449
V+ TK+ +RI
Sbjct: 85 VLLKTKIWQSRI 96
>SB_33134| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2208
Score = 27.9 bits (59), Expect = 5.4
Identities = 20/49 (40%), Positives = 28/49 (57%)
Frame = +3
Query: 261 DISDITEHSESYLENEHLKFALTEATEADNNKLEFELNSEEQVHEKKQK 407
D+S + EH S LE E+LKF A+ K +L+SE++ EKK K
Sbjct: 1637 DVS-MLEHKVSSLEEENLKFRRVLEEYANEVK---QLHSEKEDLEKKTK 1681
>SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2388
Score = 27.9 bits (59), Expect = 5.4
Identities = 18/66 (27%), Positives = 28/66 (42%)
Frame = +3
Query: 237 EEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNSEEQVHEKKQKTEV 416
E E E D E SES E+E + E E++ + E EE++ EK ++
Sbjct: 682 ESEGEESEQEDDDKEESESESESEESEEESEEEEESEESDSEESEEEEEEIKEKDIAEQL 741
Query: 417 IRSTKL 434
K+
Sbjct: 742 EEENKI 747
>SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1234
Score = 27.9 bits (59), Expect = 5.4
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Frame = +3
Query: 273 ITEHSESYLENEHLKFALTEATEADNNKLEFELNSEEQVHEKKQKTEVIRSTKL-PIARI 449
+T HS S L +L+ +AT+ + + F+L +EQV + + TE L P ++
Sbjct: 396 LTNHSASELARLYLQAKAMDATKMKDGRRGFDL--DEQVLDVVKTTEKREFLTLDPQEKL 453
Query: 450 KNIMKMDPDVNIVSSDAV 503
K I+ + DV +S+DA+
Sbjct: 454 KVIVALCHDV--LSTDAL 469
>SB_49900| Best HMM Match : GETHR (HMM E-Value=5e-18)
Length = 1044
Score = 27.5 bits (58), Expect = 7.1
Identities = 21/108 (19%), Positives = 45/108 (41%), Gaps = 5/108 (4%)
Frame = +3
Query: 183 KRLLLHRKYKPSSLQNMSEEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKLE 362
KR + + K S+ S +E H + DIT E+ E+ + + T+ ++ ++
Sbjct: 567 KRRISKMRKKSRSIDITSLKETHREDRAIDITSLKETQREDRAIDMTSLKETQREDRAID 626
Query: 363 FELNSEEQVHEKKQKTEVIRSTK-----LPIARIKNIMKMDPDVNIVS 491
E Q ++ ++ T+ + I +K + D ++I S
Sbjct: 627 ITSLKETQREDRAIDMTSLKETQREDRAIDITSLKETQREDRAIDITS 674
>SB_36579| Best HMM Match : C1_1 (HMM E-Value=0.00011)
Length = 633
Score = 27.5 bits (58), Expect = 7.1
Identities = 22/86 (25%), Positives = 40/86 (46%)
Frame = +3
Query: 204 KYKPSSLQNMSEEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNSEE 383
K + L+ +E+ + DI + + E+ + LT T+AD+ +L + E+
Sbjct: 169 KTQVKELREEVDEKTKQVTDIESKVKQLKEERESLSAQLELT-LTKADSEQLARSIAEEQ 227
Query: 384 QVHEKKQKTEVIRSTKLPIARIKNIM 461
+K+KT + K IAR K+ M
Sbjct: 228 YSDLEKEKTMIELEVKELIARHKSEM 253
>SB_14879| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +3
Query: 222 LQNMSEEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKLE 362
L ++ +C + + ++ HS +EN HL+F L + A L+
Sbjct: 221 LDDLDVLKCAQKTEECEVLVHSLQMMENPHLRFLLAAVSPAAKAALQ 267
>SB_11244| Best HMM Match : M (HMM E-Value=2.5e-08)
Length = 1381
Score = 27.5 bits (58), Expect = 7.1
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = +3
Query: 216 SSLQNMSEEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFEL-NSEEQVH 392
S + S+EE ++++ + + Y+ +EH K + E T A+ +E L NS E
Sbjct: 1036 SFYDSSSDEENDAPSELNNAPQKLKDYVRSEHFKSSFKE-TRAEKKSMERRLENSSEDFK 1094
Query: 393 EKKQKTEVIRSTKLPI 440
Q+ + + + I
Sbjct: 1095 AMLQRMQKLDKENVQI 1110
>SB_8972| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 124
Score = 27.5 bits (58), Expect = 7.1
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +3
Query: 342 ADNNKLEFELNSEEQVHEKKQKTEVIRSTKLPIARIKNIMKMDPDVNIVSS 494
+ K FE +S+++ + K+ V RSTKL R+ K + VNI S
Sbjct: 14 SSERKKSFEPDSKQRPRDHNYKSTVPRSTKLSYRRMDVHGKDNQPVNIKKS 64
>SB_27766| Best HMM Match : Exo_endo_phos (HMM E-Value=0.26)
Length = 348
Score = 27.1 bits (57), Expect = 9.4
Identities = 16/76 (21%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = +3
Query: 243 ECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNSEEQVHEKKQKTEVIR 422
E H +DIS++ E + N++L + + +D N + + H + + VI
Sbjct: 72 EMHSVLDISNLNEGINLHTPNQNLLYIQCDTQPSDKNNIGETETGPTRRHLRAKVPNVIV 131
Query: 423 STKLPIA-RIKNIMKM 467
S + +A +I ++++
Sbjct: 132 SNVMSLAPKIDEVIEL 147
>SB_59666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 139
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/51 (21%), Positives = 24/51 (47%)
Frame = +3
Query: 210 KPSSLQNMSEEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKLE 362
K + + +S E D++I + + LEN H+K ++ D ++ +
Sbjct: 37 KTDTDEGLSHSEDERDIEIDVVGQDDVGILENNHVKMVEEPESQVDKDQCD 87
>SB_58665| Best HMM Match : TSP_1 (HMM E-Value=7.5e-10)
Length = 718
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +1
Query: 142 SACKTILARRYILEKDYYYTVNINLHRYKIC 234
SACK L+ ++ILEK+ V + +HR + C
Sbjct: 545 SACKCNLSVKFILEKEQKQPVGL-MHRMRRC 574
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,931,952
Number of Sequences: 59808
Number of extensions: 192979
Number of successful extensions: 628
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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