Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304B06f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1667 + 28484069-28484071,28484151-28484240,28484339-284844...   192   2e-49
05_01_0401 + 3169979-3169981,3170071-3170160,3170556-3170684,317...   191   3e-49
03_02_0954 - 12687373-12687582,12688885-12689067,12689160-126892...   175   1e-44
01_06_0579 + 30379243-30379617                                         29   1.7  
06_01_1101 - 9044679-9045320,9045484-9045890,9046020-9046274,904...    29   2.3  
09_06_0121 + 20975132-20975755,20976834-20976977,20977333-209774...    29   3.0  
11_01_0520 + 4078075-4078198,4078726-4078957,4079068-4079147,407...    28   4.0  
03_06_0500 - 34361139-34362006,34362295-34362818,34362908-343631...    28   4.0  
11_01_0572 + 4565353-4565535,4566856-4567095,4567922-4568086,456...    28   5.2  
02_04_0324 + 22032748-22032895,22035274-22035593,22035709-22036797     27   6.9  
12_02_0472 - 19469512-19469541,19469755-19469785,19469975-19471356     27   9.1  
09_04_0365 - 16962608-16963174,16963301-16963486,16963824-169638...    27   9.1  
09_02_0181 - 5425833-5426527,5426667-5429397                           27   9.1  
07_03_0435 + 18182657-18183509,18184477-18184574,18184663-181848...    27   9.1  
03_05_0379 + 23628200-23628366,23629074-23629133,23630177-236302...    27   9.1  
02_05_0718 + 31203358-31203717,31203826-31204011                       27   9.1  
01_06_1208 + 35424241-35424370,35424415-35424728,35424782-354249...    27   9.1  

>07_03_1667 +
           28484069-28484071,28484151-28484240,28484339-28484491,
           28484575-28484757,28486137-28486295
          Length = 195

 Score =  192 bits (467), Expect = 2e-49
 Identities = 98/180 (54%), Positives = 126/180 (70%), Gaps = 8/180 (4%)
 Frame = +2

Query: 5   DRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARH 184
           ++K +RT  +S+D+               T + FN ++L+RLFMS+ NRPP+S+ RL R 
Sbjct: 11  NKKTKRTAPRSEDVYLKLIVKLYRFLVRRTKSHFNAVILKRLFMSKTNRPPLSMRRLVRF 70

Query: 185 M--KKPTREGL----IAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTF 346
           M  K P R  +    IAV+VGTVT+D R+Y++P M VAAL  TE ARARI+ AGGE LTF
Sbjct: 71  MEGKVPDRHAISGDQIAVIVGTVTDDKRIYEVPAMKVAALRFTETARARIINAGGECLTF 130

Query: 347 DQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--EKARPSRRA 520
           DQLALRAP G+ TVL++G +NAREAV+HFGPAPG P S+TKPYVR+KG   EKAR  R +
Sbjct: 131 DQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSNTKPYVRSKGRKFEKARGRRNS 190


>05_01_0401 +
           3169979-3169981,3170071-3170160,3170556-3170684,
           3170814-3170999,3172001-3172159
          Length = 188

 Score =  191 bits (466), Expect = 3e-49
 Identities = 97/174 (55%), Positives = 122/174 (70%), Gaps = 2/174 (1%)
 Frame = +2

Query: 5   DRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARH 184
           ++K +RT  +S D+               T + FN ++L+RLFMS+ NRPP+S+ RLA+ 
Sbjct: 11  NKKTKRTAPRSDDVYLKLLVKLYRFLVRRTKSNFNAVILKRLFMSKTNRPPLSLRRLAKF 70

Query: 185 MKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALR 364
           M+    E  IAV+VGTVT+D R+ +IPKM V AL  TE ARARI+ AGGE LTFDQLALR
Sbjct: 71  MEGK-EENNIAVIVGTVTDDKRIQEIPKMKVTALRFTETARARIVNAGGECLTFDQLALR 129

Query: 365 APTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--EKARPSRRA 520
           AP G+ TVL++G +NAREAVRHFG APG P SHTKPYVR+KG   EKAR  R +
Sbjct: 130 APLGENTVLLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNS 183


>03_02_0954 -
           12687373-12687582,12688885-12689067,12689160-12689288,
           12689375-12689464,12689548-12689550
          Length = 204

 Score =  175 bits (427), Expect = 1e-44
 Identities = 97/191 (50%), Positives = 123/191 (64%), Gaps = 19/191 (9%)
 Frame = +2

Query: 5   DRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARH 184
           ++K +RT  KS D+               T + FN ++LRRLFMS+ NRPP+S+ RL R 
Sbjct: 11  NKKTKRTAPKSDDVYLKLIVKLYRFLVRRTKSPFNAVILRRLFMSKTNRPPLSLRRLVRF 70

Query: 185 MKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALR 364
           M+   +E  IAV+VGTVT+D R+Y++P M VAAL  TE ARARI+  GGE LTFDQLALR
Sbjct: 71  MEG--KENQIAVIVGTVTDDKRVYEVPAMKVAALRFTETARARIVNTGGECLTFDQLALR 128

Query: 365 APTGKKT-----------------VLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGH 493
           AP G+ T                 VL++G +NAREAV+HFGPAPG P S+TKPYVR+KG 
Sbjct: 129 APLGQNTYIAMPEILTIDNFALLQVLLRGPKNAREAVKHFGPAPGVPHSNTKPYVRSKGR 188

Query: 494 --EKARPSRRA 520
             EKAR  R +
Sbjct: 189 KFEKARGRRNS 199


>01_06_0579 + 30379243-30379617
          Length = 124

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = -1

Query: 257 CTVSRHL*LSPLPRQSNPHELASS 186
           CT+S H   SP+ R S+PH LASS
Sbjct: 11  CTISCH---SPMRRSSSPHRLASS 31


>06_01_1101 -
           9044679-9045320,9045484-9045890,9046020-9046274,
           9046375-9046498,9047237-9047289,9047388-9047648,
           9047795-9047848,9047975-9048458,9048554-9048592
          Length = 772

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -3

Query: 228 PTTTAIKPSRVGFFMWR-AKRDTEIGGRLIRLIKSR 124
           P TTA KP RV F + +  K D E+ G L  L+++R
Sbjct: 676 PNTTAPKPKRVRFALPKDTKIDREVRGELQELMEAR 711


>09_06_0121 +
           20975132-20975755,20976834-20976977,20977333-20977457,
           20978090-20978194,20978755-20978989
          Length = 410

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
 Frame = +2

Query: 95  NAKFNQIVLRRLFMSR-INRPPISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKM 271
           N K N  VL  L +S+ +  P ++V  L  H + P       +V+GT T+D     +  +
Sbjct: 21  NWKKNAPVLYDLVISQPLEWPSLTVQWLPSHSRSPGSARSHRLVLGTHTSDETPNHL-LL 79

Query: 272 TVAALHVTEKARARILAAGGEI 337
             AAL +  +  A   AAGG +
Sbjct: 80  ADAALPLPPRLAAAAAAAGGAV 101


>11_01_0520 +
           4078075-4078198,4078726-4078957,4079068-4079147,
           4079256-4079409,4079438-4079494,4080733-4080811,
           4081013-4081094,4081168-4081223,4081310-4081492
          Length = 348

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 325 SSQNACTSFFGNMKSSHRHLRYLVQSHVICDCP 227
           SS ++  SF  +  SS+RHL  L+ +  +  CP
Sbjct: 96  SSLDSVRSFAKSFNSSYRHLNVLINNAGVMSCP 128


>03_06_0500 -
           34361139-34362006,34362295-34362818,34362908-34363125,
           34363259-34363406
          Length = 585

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
 Frame = -2

Query: 496 FMSLGANIGFSVRARCSWSRAKVTHCLTSISLTLYQYCLLASRSTKSQLIKSKNFSSSSQ 317
           F+ +G   GF++     +   +V   + S+ + LY   + A     SQLI + +  +S  
Sbjct: 455 FLLMGIGDGFALVGLQEYFYDQVPDSMRSLGIGLYLSVIGAGSFLSSQLITAVDRVTSHG 514

Query: 316 NACTSFFG-NMKSSHRHLRY 260
            A   +FG ++ SS   L Y
Sbjct: 515 GAAAGWFGKDLNSSRLDLFY 534


>11_01_0572 +
           4565353-4565535,4566856-4567095,4567922-4568086,
           4568612-4568887
          Length = 287

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +3

Query: 339 LLLISWLFVLRLARRQYWYKVSEML 413
           LL+++WLFV+   RR  W +V E+L
Sbjct: 143 LLVLAWLFVIDFGRR-VWGEVDELL 166


>02_04_0324 + 22032748-22032895,22035274-22035593,22035709-22036797
          Length = 518

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +2

Query: 221 VVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLAL 361
           ++G++  DV    I  + VAA+ V  + R  +   GG +L   Q+A+
Sbjct: 329 ILGSIITDV--VSISSVAVAAVVVDRRGRRTLFMVGGAVLILCQVAM 373


>12_02_0472 - 19469512-19469541,19469755-19469785,19469975-19471356
          Length = 480

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -3

Query: 330 PPAAKMRARAFSVT*RAATVIFGILYSLTSFVTVPTTTAIKPSR 199
           P  +  RAR+ S+T  A +V F      +   T  TTTA K  R
Sbjct: 293 PRPSHRRARSMSITGSAKSVRFPFTRQASRSTTTTTTTAFKVIR 336


>09_04_0365 -
           16962608-16963174,16963301-16963486,16963824-16963896,
           16964307-16964497,16964982-16965198,16965394-16965797,
           16966593-16966658,16966668-16966721,16966945-16967079,
           16967194-16967391,16967734-16967918,16968990-16969527
          Length = 937

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 210 KPSRVGFFMWRAKRDTEIG 154
           +PS+V FFMW A+R+   G
Sbjct: 899 EPSKVKFFMWLAEREVSHG 917


>09_02_0181 - 5425833-5426527,5426667-5429397
          Length = 1141

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 21/67 (31%), Positives = 26/67 (38%)
 Frame = +2

Query: 320  AAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGHEK 499
            AAGGE  +    A+ A  G    L               PAP  PR+  +   R     K
Sbjct: 1053 AAGGETGSATD-AVWAAGGATRALASAAATRVGVAAATAPAPALPRAPARCRCRMACRRK 1111

Query: 500  ARPSRRA 520
            ARP+ RA
Sbjct: 1112 ARPAGRA 1118


>07_03_0435 +
           18182657-18183509,18184477-18184574,18184663-18184833,
           18185524-18185624,18185702-18185837,18186007-18186057,
           18186202-18186489,18186610-18186844,18186924-18187204,
           18187336-18187557
          Length = 811

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = +1

Query: 118 STPALYEPYQPATNLCV-SFGAPHEEANS 201
           S PA ++ Y+P+TNL + S+  P+  A+S
Sbjct: 701 SVPAYFQQYEPSTNLILPSYLLPYAAASS 729


>03_05_0379 +
           23628200-23628366,23629074-23629133,23630177-23630209,
           23630253-23630665,23631522-23632008,23632623-23633334
          Length = 623

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +1

Query: 364 CSDWQEDSTGTRSAKCS*GSASLWPCSRSTALSH 465
           CS   E + G    +C  G    W C  +T L+H
Sbjct: 365 CSKPIEKNGGCNHVRCKCGQCLCWLCGAATGLAH 398


>02_05_0718 + 31203358-31203717,31203826-31204011
          Length = 181

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +1

Query: 205 GFDCRGSGDSHK*RETVQDTEDDGGCSSCYRK 300
           G D  GSGD  K R    D +DDG     Y+K
Sbjct: 122 GDDDDGSGDERKPRYKKHDDDDDGERKPRYKK 153


>01_06_1208 +
           35424241-35424370,35424415-35424728,35424782-35424967,
           35425361-35425523,35425601-35425787,35425875-35426016
          Length = 373

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +3

Query: 351 SWLFVLRLARRQYWYKVSEMLVRQCV-TLALLQEHRALTLNP 473
           SW  V  L + Q+WY VS+ L  +     A  +  + + LNP
Sbjct: 199 SWADVELLKKHQHWYNVSKTLAEKAAWDFAAKEGLQLVALNP 240


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,761,643
Number of Sequences: 37544
Number of extensions: 357687
Number of successful extensions: 1081
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)