Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304B05f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch...   293   1e-80
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc...   292   2e-80
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual       29   0.42 
SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit L1...    28   0.73 
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    27   1.3  
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    26   3.0  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   3.9  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   3.9  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    25   5.2  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   5.2  
SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8 |Schizo...    25   5.2  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    25   5.2  
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo...    25   9.0  

>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score =  293 bits (718), Expect = 1e-80
 Identities = 132/172 (76%), Positives = 150/172 (87%)
 Frame = +3

Query: 6   RRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSS 185
           RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ++S
Sbjct: 3   RRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQITS 62

Query: 186 EALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKP 365
           EALEA RIC NKYLVK  GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP
Sbjct: 63  EALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKP 122

Query: 366 QGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFT 521
            G VARV IGQ +MSVR+ D  +A  IEALRR ++KFPG+Q+I VSKKWGF+
Sbjct: 123 NGLVARVNIGQVLMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFS 174


>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 221

 Score =  292 bits (717), Expect = 2e-80
 Identities = 132/172 (76%), Positives = 150/172 (87%)
 Frame = +3

Query: 6   RRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSS 185
           RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ++S
Sbjct: 3   RRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQITS 62

Query: 186 EALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKP 365
           EALEA RIC NKYLVK  GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP
Sbjct: 63  EALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKP 122

Query: 366 QGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFT 521
            G VARV IGQ +MSVR+ D  +A  IEALRR ++KFPG+Q+I VSKKWGF+
Sbjct: 123 NGLVARVNIGQILMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFS 174


>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +3

Query: 24  YRYCKNKPYPKSRFCRGVPDP-KIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 200
           Y+   N     ++FC  V +  KI   +  +KRA +D   LC+  +S + E ++  +LE+
Sbjct: 34  YQKVPNSHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLES 93

Query: 201 G 203
           G
Sbjct: 94  G 94


>SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit
           L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 4/83 (4%)
 Frame = +3

Query: 270 LHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGT----VARVRIGQPIMSVRSSDRWKA 437
           L P    R+     C        G     GK +G      AR+ IG+ +  +      K 
Sbjct: 100 LKPIKAARVYTRF-CCNVPVCVKGNETRMGKGKGAFEYWAARIPIGRVLFEIGGDGMRKE 158

Query: 438 QVIEALRRAKFKFPGRQKIYVSK 506
               AL++A F  PG+ +I V +
Sbjct: 159 LAEHALKQAAFHLPGKYEIIVKQ 181


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 81  DPKIRIFDLGKKRATVDDFPLCV-HLVSDEYEQLSSEALEA 200
           DPK+R+F    KRAT  +   C   LV+ +   + S +++A
Sbjct: 320 DPKLRVFPFTTKRATHSELLRCYKELVTPKISHVDSISIKA 360


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 115 RERPLTTFHCACTWCPTNMNS 177
           R RP +T H +CT+C   + S
Sbjct: 459 RSRPDSTSHASCTYCVARLRS 479


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1038

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -1

Query: 374  STLRLAKRTTHPSLEPISSS 315
            +T +LAKR T PSL P  S+
Sbjct: 957  TTTKLAKRITQPSLSPARST 976


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
 Frame = +3

Query: 102  DLGKKRATVDDFPLCVHLVSDEYEQL---SSEALEAGRICCN--KYLVKNCGK 245
            ++ KKRA  DD    + +VS EYE L   SS+  ++     N  KY+ KN  K
Sbjct: 1033 EIEKKRAENDDLQSKLSVVSSEYENLLLISSQTNKSLEDKTNQLKYIEKNVQK 1085


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1234

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -1

Query: 200  CLQSL*AQLFIFVGHQVHAQWKVVNGRSLLTQIEDTDLG 84
            CL  L   L   + H++ ++W+ +N R LL + +  + G
Sbjct: 940  CLLPLLPALLSELDHKLVSEWRRINDRGLLVEEDAEETG 978


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 243 KDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMR 347
           +D  H+RM ++ FH   IN MLS +  D  +  MR
Sbjct: 859 EDNSHLRMSINSFH---INDMLSKSSRDNNRQLMR 890


>SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 569

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
 Frame = -3

Query: 216 CSRYVLPP-KP-LSSAVHIRRTPSARTVESRQRS------LSSYPNRRYGSWDQVHPDRT 61
           C++ + PP KP + SA+      S  T E    S      LS    +R+ +W    P   
Sbjct: 494 CAKKIQPPFKPSVESAIDTSNFDSEFTSEIPMDSVVADSHLSETVQQRFANWSYQRPTTI 553

Query: 60  SISDTVYFCSTGSIL 16
             SD +   + GS++
Sbjct: 554 DTSDDINTIAPGSVI 568


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
           Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +1

Query: 67  VGVYLIPRSVSSIWV 111
           +GVYLIP++ S +W+
Sbjct: 394 IGVYLIPKAWSDLWL 408


>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
           Swi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +3

Query: 57  SRFCRGVPDPKIRIFDLGKKRATVDDFP-LCVHLVSDE 167
           S FC   PDPK       K  A  DD P +  H+ S++
Sbjct: 84  SFFCTTTPDPKTESPSFVKYNAHCDDHPEISGHVSSND 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,397,674
Number of Sequences: 5004
Number of extensions: 51677
Number of successful extensions: 181
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)