Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304B05f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical pr...   287   3e-78
Z66511-7|CAD57693.1|  567|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z81055-1|CAB02889.1|  618|Caenorhabditis elegans Hypothetical pr...    28   3.5  
Z68760-10|CAL49442.1| 1427|Caenorhabditis elegans Hypothetical p...    28   3.5  
Z68760-9|CAJ80808.1| 1379|Caenorhabditis elegans Hypothetical pr...    28   3.5  
Z68760-8|CAA92996.1| 1398|Caenorhabditis elegans Hypothetical pr...    28   3.5  
Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical pr...    28   3.5  
AF099919-10|AAC68792.1|  205|Caenorhabditis elegans Max-like pro...    28   3.5  
U50199-4|AAA91264.2|  142|Caenorhabditis elegans Abnormal cell l...    27   6.2  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    27   6.2  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    27   6.2  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    27   6.2  
Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical p...    27   8.1  
Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical
           protein F10B5.1 protein.
          Length = 214

 Score =  287 bits (704), Expect = 3e-78
 Identities = 132/173 (76%), Positives = 143/173 (82%)
 Frame = +3

Query: 3   GRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLS 182
           GRRPARCYRY KNKPYPKSRFCRGVPD KIRIFDLG KRA VD FP CVH++S+E E LS
Sbjct: 2   GRRPARCYRYIKNKPYPKSRFCRGVPDAKIRIFDLGNKRANVDTFPACVHMMSNEREHLS 61

Query: 183 SEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGK 362
           SEALEA RIC NKY+VKNCGKD FH+R+R HPFHV RINKMLSCAGADRLQTGMRGA+GK
Sbjct: 62  SEALEAARICANKYMVKNCGKDGFHLRVRKHPFHVTRINKMLSCAGADRLQTGMRGAYGK 121

Query: 363 PQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFT 521
           PQG VARV IG  + S+R  +      IEA RRAKFKFPGRQ I  S+KWGFT
Sbjct: 122 PQGLVARVDIGDILFSMRIKEGNVKHAIEAFRRAKFKFPGRQIIVSSRKWGFT 174


>Z66511-7|CAD57693.1|  567|Caenorhabditis elegans Hypothetical
           protein F07A11.6d protein.
          Length = 567

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = -1

Query: 434 LPPVTRAHGHDGLSNANTCYSTLRLAKRTTHPSLEPISSSA 312
           +P VT A   + LSN  T  ST  LA   T  +L P+S  A
Sbjct: 46  VPVVTTASTPNPLSNLETLLSTASLANLATGGALNPLSMLA 86


>Z81055-1|CAB02889.1|  618|Caenorhabditis elegans Hypothetical
           protein F01G10.1 protein.
          Length = 618

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +3

Query: 345 RGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIE--ALRRAKFKFPGRQK 491
           R   GKP   +A+   G+ I  + + D W  + +    +   K +F G QK
Sbjct: 228 RSTKGKPTAIIAKTLKGKGIEGIENEDNWHGKPVPEGTVNAIKARFHGSQK 278


>Z68760-10|CAL49442.1| 1427|Caenorhabditis elegans Hypothetical
            protein F36H1.2c protein.
          Length = 1427

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 14   SKMLPVLQK*TVSEIEVLSGCT*SQDPYLR 103
            SK +P  ++ TV  ++    CT S DPYLR
Sbjct: 1042 SKGIPSAERLTVGHVKKFVPCTSSLDPYLR 1071


>Z68760-9|CAJ80808.1| 1379|Caenorhabditis elegans Hypothetical protein
            F36H1.2b protein.
          Length = 1379

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 14   SKMLPVLQK*TVSEIEVLSGCT*SQDPYLR 103
            SK +P  ++ TV  ++    CT S DPYLR
Sbjct: 1013 SKGIPSAERLTVGHVKKFVPCTSSLDPYLR 1042


>Z68760-8|CAA92996.1| 1398|Caenorhabditis elegans Hypothetical protein
            F36H1.2a protein.
          Length = 1398

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 14   SKMLPVLQK*TVSEIEVLSGCT*SQDPYLR 103
            SK +P  ++ TV  ++    CT S DPYLR
Sbjct: 1013 SKGIPSAERLTVGHVKKFVPCTSSLDPYLR 1042


>Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical
           protein C09G5.2 protein.
          Length = 476

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 364 GLPNAPRIPVWSLSAPA 314
           G PN+P +P+W LS P+
Sbjct: 232 GFPNSPLLPIWLLSYPS 248


>AF099919-10|AAC68792.1|  205|Caenorhabditis elegans Max-like
           protein 2 protein.
          Length = 205

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +3

Query: 60  RFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGR 206
           R C  +   K  I D  K+ A ++     + +++ EYEQ++S   +AG+
Sbjct: 93  RACDFMSQLKTDISDADKQLAQLNAQAAALEMIASEYEQMASSVPDAGQ 141


>U50199-4|AAA91264.2|  142|Caenorhabditis elegans Abnormal cell
           lineage protein 32 protein.
          Length = 142

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 385 FALDSPSCPCALVTGGRHRSSRLCAVPSSSSPDVKR 492
           F+LDSP+ P +L  GG     + C    + SP + R
Sbjct: 36  FSLDSPNYPDSLSNGGGKDDKKKCRRYKTPSPQLLR 71


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -1

Query: 122 RSLLTQIED--TDLGIRYTPTEPRFRIRFIFAVPVA 21
           RS +  IE   +D+ +  TP +P+   +F+F VPVA
Sbjct: 593 RSYMKLIETAISDILLHRTPIDPQADYKFVFEVPVA 628


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -1

Query: 122 RSLLTQIED--TDLGIRYTPTEPRFRIRFIFAVPVA 21
           RS +  IE   +D+ +  TP +P+   +F+F VPVA
Sbjct: 593 RSYMKLIETAISDILLHRTPIDPQADYKFVFEVPVA 628


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -1

Query: 122 RSLLTQIED--TDLGIRYTPTEPRFRIRFIFAVPVA 21
           RS +  IE   +D+ +  TP +P+   +F+F VPVA
Sbjct: 176 RSYMKLIETAISDILLHRTPIDPQADYKFVFEVPVA 211


>Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical
            protein R11A8.7a protein.
          Length = 2606

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = -3

Query: 285  RGKGEVSCGYGTD-PFRSSLRGTYCSRYVLPPKPLSSAVHIRRTPSARTVESRQRSLSSY 109
            RG   V+  + ++   +S++  TY    +  PK LSSA   R++ S    +S QRS  S+
Sbjct: 1879 RGNLSVASSFSSEGTSKSAVDSTYAPSSI--PKSLSSASIARQSASPIPQQSSQRSAKSH 1936

Query: 108  PNRR 97
             +++
Sbjct: 1937 HHQK 1940


>Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical
           protein R11A8.7d protein.
          Length = 1427

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = -3

Query: 285 RGKGEVSCGYGTD-PFRSSLRGTYCSRYVLPPKPLSSAVHIRRTPSARTVESRQRSLSSY 109
           RG   V+  + ++   +S++  TY    +  PK LSSA   R++ S    +S QRS  S+
Sbjct: 700 RGNLSVASSFSSEGTSKSAVDSTYAPSSI--PKSLSSASIARQSASPIPQQSSQRSAKSH 757

Query: 108 PNRR 97
            +++
Sbjct: 758 HHQK 761


>Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical protein
            R11A8.7a protein.
          Length = 2606

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = -3

Query: 285  RGKGEVSCGYGTD-PFRSSLRGTYCSRYVLPPKPLSSAVHIRRTPSARTVESRQRSLSSY 109
            RG   V+  + ++   +S++  TY    +  PK LSSA   R++ S    +S QRS  S+
Sbjct: 1879 RGNLSVASSFSSEGTSKSAVDSTYAPSSI--PKSLSSASIARQSASPIPQQSSQRSAKSH 1936

Query: 108  PNRR 97
             +++
Sbjct: 1937 HHQK 1940


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,505,104
Number of Sequences: 27780
Number of extensions: 304858
Number of successful extensions: 888
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)