Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304B05f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C) cont...   284   2e-77
At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) / Wi...   283   5e-77
At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Near...   283   7e-77
At5g47870.1 68418.m05914 expressed protein                             29   2.5  
At4g02180.1 68417.m00290 DC1 domain-containing protein contains ...    29   2.5  
At5g24280.1 68418.m02856 expressed protein ; expression supporte...    28   3.3  
At5g55800.1 68418.m06954 DC1 domain-containing protein contains ...    28   4.4  
At5g48310.1 68418.m05968 expressed protein                             27   5.8  
At5g02360.1 68418.m00159 DC1 domain-containing protein contains ...    27   5.8  
At5g46660.1 68418.m05749 CHP-rich zinc finger protein, putative ...    27   7.7  
At5g18370.1 68418.m02161 disease resistance protein (TIR-NBS-LRR...    27   7.7  
At2g30040.1 68415.m03653 protein kinase family protein contains ...    27   7.7  
At1g53180.1 68414.m06027 expressed protein                             27   7.7  

>At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C)
           contains Pfam profile: PF00826: Ribosomal L10
          Length = 221

 Score =  284 bits (697), Expect = 2e-77
 Identities = 130/173 (75%), Positives = 144/173 (83%)
 Frame = +3

Query: 3   GRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLS 182
           GRRPARCYR  K KPYPKSR+CRGVPDPKIRI+D+G KR  VD+FP CVHLVS E E +S
Sbjct: 2   GRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVS 61

Query: 183 SEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGK 362
           SEALEA RI CNKY+VK+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK
Sbjct: 62  SEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGK 121

Query: 363 PQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFT 521
             GT ARV IGQ ++SVR  D       EALRRAKFKFPGRQKI VS+KWGFT
Sbjct: 122 ALGTCARVAIGQVLLSVRCKDNHGVHAQEALRRAKFKFPGRQKIIVSRKWGFT 174


>At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) /
           Wilm's tumor suppressor protein-related similar to tumor
           suppressor GI:575354 from [Oryza sativa]
          Length = 220

 Score =  283 bits (694), Expect = 5e-77
 Identities = 130/173 (75%), Positives = 144/173 (83%)
 Frame = +3

Query: 3   GRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLS 182
           GRRPARCYR  K KPYPKSR+CRGVPDPKIRI+D+G KR  VD+FP CVHLVS E E +S
Sbjct: 2   GRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVS 61

Query: 183 SEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGK 362
           SEALEA RI CNKY+VK+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK
Sbjct: 62  SEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGK 121

Query: 363 PQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFT 521
             GT ARV IGQ ++SVR  D       EALRRAKFKFPGRQKI VS+KWGFT
Sbjct: 122 ALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFT 174


>At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Nearly
           identical to ribosomal protein L10.e, Wilm's tumor
           suppressor homologue, gi|17682 (Z15157), however
           differences in sequence indicate this is a different
           member of the L10 family
          Length = 221

 Score =  283 bits (693), Expect = 7e-77
 Identities = 130/173 (75%), Positives = 144/173 (83%)
 Frame = +3

Query: 3   GRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLS 182
           GRRPARCYR  K KPYPKSR+CRGVPDPKIRI+D+G KR  VD+FP CVHLVS E E +S
Sbjct: 2   GRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENVS 61

Query: 183 SEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGK 362
           SEALEA RI CNKY+VK+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK
Sbjct: 62  SEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGK 121

Query: 363 PQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFT 521
             GT ARV IGQ ++SVR  D       EALRRAKFKFPGRQKI VS+KWGFT
Sbjct: 122 ALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFT 174


>At5g47870.1 68418.m05914 expressed protein
          Length = 199

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 20/73 (27%), Positives = 30/73 (41%)
 Frame = +3

Query: 261 RMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQ 440
           R++L PF  + +N+ + C+G      G+ G     +  V       PI    SS      
Sbjct: 23  RIKLSPFRTVAVNRGVRCSGG-----GVGGGDAGKKKAVPNSNYVVPIDKFSSSSSITRP 77

Query: 441 VIEALRRAKFKFP 479
           +IE LR    K P
Sbjct: 78  LIEILRDLNKKIP 90


>At4g02180.1 68417.m00290 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 989

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +3

Query: 183 SEALEAGRIC--CNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSC 314
           S+A+  G  C  C+ +  K CG+    I+   HP H +++     C
Sbjct: 65  SKAVSVGYYCKSCDFFAHKKCGESSEFIQHPSHPNHTLQLRSSEGC 110



 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +3

Query: 180 SSEALEAGRIC--CNKYLVKNCGKDQFHIRMRLHPFHVIRINK 302
           S E++  G  C  C+ ++ K CG+    I    HP H + +N+
Sbjct: 369 SLESVTDGFYCKSCDIFIHKKCGESSGIIDHSSHPDHTLELNR 411


>At5g24280.1 68418.m02856 expressed protein ; expression supported by
            MPSS
          Length = 1634

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 159  SDEYEQLSSEALEAGRICCNKYLV 230
            SDEY +  SEA   GR   N++LV
Sbjct: 1431 SDEYRKFQSEAASLGRSITNRFLV 1454


>At5g55800.1 68418.m06954 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 578

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 207 ICCNKYLVKNCGKDQFHIRMRLHPFHVIRI 296
           + C K   K C +  F I    HPFH +R+
Sbjct: 107 LICEKMFHKECVESPFEIIHPSHPFHSLRL 136


>At5g48310.1 68418.m05968 expressed protein
          Length = 1156

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = -1

Query: 176 LFIFVGHQVHAQWKVVNGRSLLTQIEDTDLGIRYTPTEPRFRIR-FIFAVPVASCWPAP 3
           LF+ + +++ A  K+ N   L + I+  +L      T+   R+R F+ AVP  SC P P
Sbjct: 736 LFLIISNEIEADIKITNEHVLPSSIDLANLAAVVYSTQLCHRLRAFLSAVP-PSC-PLP 792


>At5g02360.1 68418.m00159 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 342

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = +3

Query: 111 KKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCG--KDQFHIRMRLHPFH 284
           KK   +   PL + +++ EYE         GR CCN    ++CG   +    ++ + P+H
Sbjct: 255 KKHHALRPHPLTLTVITSEYEG------NVGRFCCNACQRESCGFVYEDLGAKIGVLPYH 308


>At5g46660.1 68418.m05749 CHP-rich zinc finger protein, putative
           contains similarity to CHP-rich zinc finger protein
          Length = 305

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +3

Query: 213 CNKYLVKNCGKDQFHIRMRLHPFHVIRINKML 308
           C K   K C +    I+   HPFH +R+   L
Sbjct: 143 CQKNFHKECVQSPLEIKHPSHPFHSLRLYSYL 174


>At5g18370.1 68418.m02161 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1210

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 282 HVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQ 398
           H+ RIN +L    +D    G+ G  G  + T+ARV   Q
Sbjct: 240 HITRINSLLCLESSDVRMIGILGPPGIGKTTIARVLYDQ 278


>At2g30040.1 68415.m03653 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 463

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 390 CEHVLQYPEACQTHHAS 340
           C+ +LQ+P  CQ HH S
Sbjct: 261 CDQLLQHPFLCQDHHDS 277


>At1g53180.1 68414.m06027 expressed protein
          Length = 358

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 9   RPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGK 113
           R +R  RYC + PYP S      P+ K+   D+GK
Sbjct: 27  RRSRGLRYCHSDPYPSSSSTSTSPE-KMGDSDIGK 60


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,882,111
Number of Sequences: 28952
Number of extensions: 288045
Number of successful extensions: 873
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)