Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304B02f
         (312 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B 27a|Schi...   101   3e-23
SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein L27a.2/L28A|Sc...    97   4e-22
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    25   3.5  
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    24   6.1  
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    23   8.1  
SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyce...    23   8.1  

>SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B
           27a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score =  101 bits (242), Expect = 3e-23
 Identities = 49/102 (48%), Positives = 57/102 (55%)
 Frame = +2

Query: 5   TSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFH 184
           T   KTRKLRGHVS                  AGG  H R + DKYHPGYFGK+GMR FH
Sbjct: 3   THTSKTRKLRGHVSAGHGRIGKHRKHPGGRGKAGGLQHLRSHFDKYHPGYFGKVGMRRFH 62

Query: 185 FRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPXINIV 310
             KN  + P +NLD+LWTLV  +TR KY        P IN++
Sbjct: 63  LMKNPLWRPTVNLDRLWTLVPNETREKYLGKNTEVAPVINVL 104


>SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein
           L27a.2/L28A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 148

 Score = 97.5 bits (232), Expect = 4e-22
 Identities = 47/102 (46%), Positives = 56/102 (54%)
 Frame = +2

Query: 5   TSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFH 184
           T   KTRKLRGHVS                  AGG  H R + DKYHPGYFGK+GMR FH
Sbjct: 3   THVSKTRKLRGHVSAGHGRIGKHRKHPGGRGKAGGLQHLRSHFDKYHPGYFGKVGMRRFH 62

Query: 185 FRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPXINIV 310
             KN  + P +NLD+LWTL+  + R KY        P IN++
Sbjct: 63  LMKNPLWRPTVNLDRLWTLLPNEARDKYLGKNTEVAPVINVL 104


>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 218 NLDKLWTLVSEQTRLKYASAPDGKVP 295
           NL K W  +S     K++  P+G +P
Sbjct: 323 NLKKQWASISPNITYKHSYNPNGTIP 348


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +2

Query: 131 MDKYHPGYFGKLGMRNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAP 280
           +DK   G   +LG+R   F+ N  +  +  L K+   V E+ R +Y   P
Sbjct: 443 IDKDKLGGTMRLGLRPTFFQPNSEWSKLRKLHKMVDEVLERHRHRYEINP 492


>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 103 WW*APSQNQHGQVPS 147
           W  +PS+NQH  VPS
Sbjct: 431 WQCSPSRNQHELVPS 445


>SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 310 DNIDXGDLAIWSRCILQPRL 251
           DN+D  DLA +S+ I +P L
Sbjct: 2   DNLDEDDLAFFSKPIKKPPL 21


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,219,283
Number of Sequences: 5004
Number of extensions: 22238
Number of successful extensions: 55
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)