Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304B02f
(312 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1250 - 25183375-25183815 99 6e-22
03_04_0027 + 16593133-16593573 99 8e-22
02_01_0563 + 4134954-4135388 97 3e-21
09_04_0302 + 16501020-16501049,16501568-16501659,16502063-165021... 27 2.3
02_02_0525 - 11182043-11182080,11182386-11182511,11182760-11183486 27 2.3
04_03_1020 - 21761297-21761555,21761630-21761739,21762402-217626... 27 3.1
12_01_0418 - 3304741-3304904,3305579-3305762,3307254-3307347,330... 27 4.1
03_05_0422 - 24076917-24077125,24077209-24077266,24077350-240773... 27 4.1
02_05_0267 - 27284781-27284957,27285082-27285126,27285858-272859... 27 4.1
01_06_0884 + 32715963-32716284,32716837-32717567 27 4.1
11_03_0126 + 10371536-10371596,10372467-10372544,10373968-103741... 26 5.4
08_02_1287 - 25886509-25886766,25886887-25887004,25887098-258871... 26 5.4
02_05_0608 + 30329174-30329362,30329681-30329907,30330035-303301... 26 5.4
07_03_1737 + 29137654-29137842,29137999-29138061,29138196-291382... 26 7.2
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 26 7.2
03_03_0106 - 14500935-14501263,14501357-14501432,14501531-14501542 26 7.2
07_03_1617 - 28169177-28169400,28169508-28169763,28170308-281705... 25 9.5
06_01_0316 + 2274842-2275354,2275455-2275588,2276828-2276941,227... 25 9.5
06_01_0018 + 194295-194640,194679-194917,195737-195885,196248-19... 25 9.5
>07_03_1250 - 25183375-25183815
Length = 146
Score = 99.1 bits (236), Expect = 6e-22
Identities = 46/101 (45%), Positives = 61/101 (60%)
Frame = +2
Query: 5 TSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFH 184
TS +K RK RGHVS NAGG HHHRI DKYHPGYFGK+GMR FH
Sbjct: 3 TSLRKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFH 62
Query: 185 FRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPXINI 307
+NK + P +N+++LW++V + + A A GK P +++
Sbjct: 63 RLRNKFYSPAVNVERLWSMVPAEQAAEAAGA--GKAPLLDV 101
>03_04_0027 + 16593133-16593573
Length = 146
Score = 98.7 bits (235), Expect = 8e-22
Identities = 48/101 (47%), Positives = 58/101 (57%)
Frame = +2
Query: 5 TSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFH 184
T KK RK RGHVS NAGG HHHRI DKYHPGYFGK+GMR FH
Sbjct: 3 TRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFH 62
Query: 185 FRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPXINI 307
N+ CP +N+++LW++V K A A GK P I++
Sbjct: 63 KLSNRFHCPAVNVERLWSMVPTD---KAAEAGAGKAPVIDV 100
>02_01_0563 + 4134954-4135388
Length = 144
Score = 96.7 bits (230), Expect = 3e-21
Identities = 47/101 (46%), Positives = 58/101 (57%)
Frame = +2
Query: 5 TSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFH 184
T KK RK RGHVS NAGG HHHRI DKYHPGYFGK+GMR FH
Sbjct: 3 TRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFH 62
Query: 185 FRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPXINI 307
N+ CP +N+++LW++V + A A GK P I++
Sbjct: 63 RLSNRFHCPAVNVERLWSMVPAE-----AGAGAGKAPVIDV 98
>09_04_0302 +
16501020-16501049,16501568-16501659,16502063-16502198,
16502297-16502727,16502950-16503028
Length = 255
Score = 27.5 bits (58), Expect = 2.3
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -2
Query: 125 FCDGAHHQHYHDLLDAYG 72
+C+G HH H H D+ G
Sbjct: 132 YCNGGHHHHGHQCYDSVG 149
>02_02_0525 - 11182043-11182080,11182386-11182511,11182760-11183486
Length = 296
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -1
Query: 108 PPALPRPPGCLRCFPIRPCP 49
PPA P PP L C P+ P P
Sbjct: 10 PPAPPSPPPALPCDPMPPPP 29
>04_03_1020 -
21761297-21761555,21761630-21761739,21762402-21762635,
21762710-21762817,21762910-21762969,21763549-21763624,
21763710-21763870,21764485-21764547,21764657-21764744,
21765062-21765592,21766344-21766783
Length = 709
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Frame = -1
Query: 111 SPP-ALPRPPGCLRCFPIRPCP 49
SPP LP PPG C P+ P P
Sbjct: 263 SPPHPLPLPPGPATCSPLPPSP 284
>12_01_0418 -
3304741-3304904,3305579-3305762,3307254-3307347,
3308530-3308882,3309140-3309274,3309354-3309392,
3309587-3309652,3309739-3309834,3310291-3310527,
3310602-3310722,3310854-3310889,3313062-3313159,
3313298-3313591,3313842-3313904,3314280-3314438,
3314557-3314655
Length = 745
Score = 26.6 bits (56), Expect = 4.1
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = -2
Query: 266 TSASSVQRLMSKAYLSSKLDRNSCSF*SGNFSYQVCQSIQDGTCP 132
T+ SSV ++A+ KL + SF +GN S+ ++ +G+ P
Sbjct: 325 TTDSSVNGWKAEAHEPLKLFQKGSSFLAGNLSFSRARASLEGSAP 369
>03_05_0422 -
24076917-24077125,24077209-24077266,24077350-24077399,
24077494-24077754,24077837-24078230,24081256-24081366,
24082255-24082596
Length = 474
Score = 26.6 bits (56), Expect = 4.1
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2
Query: 104 GGEHHHRINMDKYH 145
GG HHH+ NM K H
Sbjct: 313 GGGHHHKQNMQKQH 326
>02_05_0267 -
27284781-27284957,27285082-27285126,27285858-27285923,
27286043-27286114,27286225-27286350,27286563-27287217,
27287313-27287521
Length = 449
Score = 26.6 bits (56), Expect = 4.1
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -2
Query: 122 CDGAHHQHYHDLLDAYGAFRYDHVRD*HDLSAS-*SSFLR 6
C G HH H+H L G+ + ++ H+L+ S +SFL+
Sbjct: 165 CYGEHHHHHHHQLTKEGSCNHQQ-QEQHELAISPMASFLQ 203
>01_06_0884 + 32715963-32716284,32716837-32717567
Length = 350
Score = 26.6 bits (56), Expect = 4.1
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -1
Query: 117 WCSPPALPRPPGCLRCFP 64
WC PA+P+ RCFP
Sbjct: 186 WCPVPAMPQVDWEFRCFP 203
>11_03_0126 +
10371536-10371596,10372467-10372544,10373968-10374127,
10374286-10374610,10374708-10374860,10374985-10375236,
10375356-10375445,10375543-10375621,10375712-10375818,
10375921-10376048,10376329-10376419
Length = 507
Score = 26.2 bits (55), Expect = 5.4
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -1
Query: 156 KYPGWYLSMLIL*WCSPPALPR-PPGCLRCFPI 61
KY G +L+ + W +PP R PPG + FPI
Sbjct: 43 KYDGGWLAHWVYRWINPPCNGRLPPGSMG-FPI 74
>08_02_1287 -
25886509-25886766,25886887-25887004,25887098-25887177,
25887258-25887338,25887493-25887576,25888013-25888171,
25888660-25888752,25888928-25888945,25889194-25889280,
25889634-25889760,25889849-25889920,25890319-25890404,
25890519-25890626,25890709-25890850,25891432-25891508,
25891902-25892054,25892411-25892503,25892608-25892790,
25892924-25893334
Length = 809
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = +1
Query: 106 W*APSQNQHGQVPSWILWQTWYEK 177
W A Q GQ P W +W W K
Sbjct: 490 WDAGGLYQVGQFPHWKIWSEWNGK 513
>02_05_0608 +
30329174-30329362,30329681-30329907,30330035-30330190,
30330893-30331078,30331184-30331368,30331571-30331602
Length = 324
Score = 26.2 bits (55), Expect = 5.4
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +1
Query: 142 PSWILWQTWYEKFPL 186
P WILW T YE P+
Sbjct: 245 PFWILWSTSYEVVPM 259
>07_03_1737 +
29137654-29137842,29137999-29138061,29138196-29138267,
29138411-29138518,29138615-29138695,29138818-29138871,
29138956-29139081,29139162-29139251,29139444-29139566,
29139667-29139777,29139927-29140040,29140214-29140270,
29140350-29140424,29140526-29140600
Length = 445
Score = 25.8 bits (54), Expect = 7.2
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = -2
Query: 119 DGAHHQHYHDLLDAYGAFRYDHVRD 45
D ++ ++HD+ DA+G HV++
Sbjct: 284 DDKYYPYFHDVYDAFGDSEEKHVKE 308
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 25.8 bits (54), Expect = 7.2
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -2
Query: 116 GAHHQHYHDLLDAYGAFRYDH 54
G HH+H+HD +G DH
Sbjct: 533 GRHHRHHHDHRHRHGHSHGDH 553
>03_03_0106 - 14500935-14501263,14501357-14501432,14501531-14501542
Length = 138
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = -1
Query: 114 CSPPALPRPPGCLRCFPIRPC 52
C PP P PGC C P C
Sbjct: 95 CPPPPPPCCPGCNSCRPACQC 115
>07_03_1617 -
28169177-28169400,28169508-28169763,28170308-28170556,
28170680-28170810,28170902-28171157
Length = 371
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/45 (26%), Positives = 20/45 (44%)
Frame = +2
Query: 107 GEHHHRINMDKYHPGYFGKLGMRNFHFRKNKNFCPVLNLDKLWTL 241
G+ + D YHP L M + + + +NL KL++L
Sbjct: 327 GDRKSHVFWDPYHPSEAANLVMAKYIVDGDSKYISPMNLRKLFSL 371
>06_01_0316 +
2274842-2275354,2275455-2275588,2276828-2276941,
2277046-2277232,2277326-2277394,2277570-2277836
Length = 427
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +2
Query: 158 GKLGMR-NFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPD 283
GK GMR ++H R + +L +W ++++ TR + + PD
Sbjct: 230 GKNGMRRDWHVRDYNSGQTILRATSVWVMMNKNTR-RLSKMPD 271
>06_01_0018 + 194295-194640,194679-194917,195737-195885,196248-196342,
196685-196780,197248-197399,198683-198823,199068-199319,
199463-199603,199686-200003,200146-200232,201025-202006,
202091-202179,202968-203072,203155-204306,204844-205359,
205455-205650,206299-207182
Length = 1979
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -2
Query: 119 DGAHHQHYHDLLDAYG 72
D AHHQH L D YG
Sbjct: 1647 DSAHHQHRKTLDDLYG 1662
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,294,157
Number of Sequences: 37544
Number of extensions: 161430
Number of successful extensions: 499
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -