Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304B02f
         (312 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4350| Best HMM Match : L15 (HMM E-Value=3.9e-10)                    79   5e-16
SB_3035| Best HMM Match : PAN (HMM E-Value=2.9e-08)                    32   0.11 
SB_50276| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.3  
SB_26471| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.1  
SB_45977| Best HMM Match : MBT (HMM E-Value=0)                         27   4.1  
SB_49877| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.4  
SB_46796| Best HMM Match : RCC1 (HMM E-Value=3e-14)                    26   7.2  
SB_20795| Best HMM Match : Amelogenin (HMM E-Value=1)                  25   9.5  
SB_55406| Best HMM Match : DUF1534 (HMM E-Value=0.45)                  25   9.5  

>SB_4350| Best HMM Match : L15 (HMM E-Value=3.9e-10)
          Length = 173

 Score = 79.4 bits (187), Expect = 5e-16
 Identities = 34/63 (53%), Positives = 45/63 (71%)
 Frame = +2

Query: 122 RINMDKYHPGYFGKLGMRNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPXI 301
           R + +  HPGYFGK+GMR+FH  +N    P +NLDK+W+LVSEQTR  Y +  DG VP I
Sbjct: 67  RGSYEAIHPGYFGKVGMRHFHLTRNAYHKPSINLDKVWSLVSEQTRQNYKNKKDGPVPVI 126

Query: 302 NIV 310
           ++V
Sbjct: 127 DVV 129


>SB_3035| Best HMM Match : PAN (HMM E-Value=2.9e-08)
          Length = 240

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -2

Query: 206 RNSCSF*SGNFSYQVCQSIQDGTCPC*FCDGAHHQHYHDLLDAYGA 69
           R+SC   +  F   +C+S    T PC   D  H +H  DL+D  GA
Sbjct: 52  RSSCQ--ARCFMNNLCRSYNYNTTPCQLSDSDHLEHPSDLVDKPGA 95


>SB_50276| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1048

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 11/46 (23%), Positives = 22/46 (47%)
 Frame = -2

Query: 245 RLMSKAYLSSKLDRNSCSF*SGNFSYQVCQSIQDGTCPC*FCDGAH 108
           R++ K YL    ++  C   +    + +C+   +G+C    CD +H
Sbjct: 85  RVILKTYLCVSYEQGFCKSGNSCTRWHICKGFLEGSCTGTHCDKSH 130


>SB_26471| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 566

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = +1

Query: 130 HGQVPSWILWQTWY 171
           +G+  SW++W+TW+
Sbjct: 342 YGEFSSWLVWRTWF 355


>SB_45977| Best HMM Match : MBT (HMM E-Value=0)
          Length = 1198

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 17/66 (25%), Positives = 25/66 (37%)
 Frame = -2

Query: 290  PCHLEQMHTSASSVQRLMSKAYLSSKLDRNSCSF*SGNFSYQVCQSIQDGTCPC*FCDGA 111
            P  L+ ++  +  V RL + +         +    SG         I DG CP   CDG+
Sbjct: 890  PYSLQNLNKDSCLVDRLSANSMTEESDWSYASKNKSGGIGGPRRGEIMDGVCPTPGCDGS 949

Query: 110  HHQHYH 93
             H   H
Sbjct: 950  GHVSGH 955


>SB_49877| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 607

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -3

Query: 265 LQPRLFRD*CPKLI*VQNWTEILVLSKVEISHTKFAKVS 149
           +QP + RD CPK I +     ++     ++   K AK++
Sbjct: 130 IQPTIHRDLCPKNILILKKDSVITAKITDVGLAKMAKMN 168


>SB_46796| Best HMM Match : RCC1 (HMM E-Value=3e-14)
          Length = 350

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -2

Query: 290 PCHLEQMHTSASSVQRLMSKAYLSSKLDRNSCSF*SGNFSY 168
           PC L+ MH +   V ++   A  S  LD N   F  G+  Y
Sbjct: 71  PCPLQIMHPTDKKVTKVCCGAEFSMLLDENGDIFSFGSPEY 111


>SB_20795| Best HMM Match : Amelogenin (HMM E-Value=1)
          Length = 630

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +2

Query: 101 AGGEHHHRINMDKYHPGYFGKLGMRN 178
           A G HHH  NM + HP        RN
Sbjct: 374 ARGGHHHHGNMQRRHPSVGNVSSNRN 399


>SB_55406| Best HMM Match : DUF1534 (HMM E-Value=0.45)
          Length = 248

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -1

Query: 81  CLRCFPIRPCP 49
           CLRC P  PCP
Sbjct: 72  CLRCSPSEPCP 82


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,247,295
Number of Sequences: 59808
Number of extensions: 177246
Number of successful extensions: 340
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 340
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 387973711
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)