Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304B02f
         (312 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-7|AAK27870.1|  145|Caenorhabditis elegans Hypothetical ...   114   1e-26
AC087079-8|AAK27871.1|   88|Caenorhabditis elegans Hypothetical ...    46   4e-06
Z77655-1|CAB01137.1|  393|Caenorhabditis elegans Hypothetical pr...    28   1.2  
Z75550-7|CAA99925.2|  195|Caenorhabditis elegans Hypothetical pr...    28   1.2  
U58749-10|AAK18879.1|  465|Caenorhabditis elegans Temporarily as...    27   2.8  
U41995-1|AAA83459.1|  301|Caenorhabditis elegans Serpentine rece...    27   2.8  
AC024817-17|AAU87811.1|  178|Caenorhabditis elegans C-type lecti...    27   2.8  
U39472-5|AAK31393.1|  128|Caenorhabditis elegans Hypothetical pr...    27   3.6  
U28735-3|AAF99958.3|  467|Caenorhabditis elegans Glycosylation r...    27   3.6  
U28735-2|AAM69111.1|  543|Caenorhabditis elegans Glycosylation r...    27   3.6  
AF082011-1|AAD03023.1|  467|Caenorhabditis elegans UDP-N-acetylg...    27   3.6  
Z81067-5|CAD92378.1|  965|Caenorhabditis elegans Hypothetical pr...    25   8.4  
U97196-12|AAB52456.2|  564|Caenorhabditis elegans Hypothetical p...    25   8.4  
AL161712-19|CAC70143.2|  261|Caenorhabditis elegans Hypothetical...    25   8.4  
AF040642-10|AAB94949.2|  576|Caenorhabditis elegans Hypothetical...    25   8.4  

>AC087079-7|AAK27870.1|  145|Caenorhabditis elegans Hypothetical
           protein Y37E3.8a protein.
          Length = 145

 Score =  114 bits (274), Expect = 1e-26
 Identities = 52/101 (51%), Positives = 67/101 (66%)
 Frame = +2

Query: 2   ATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNF 181
           A + +KTRKLRGHVS                 NAGG+HHHRIN DKYHPGYFGK+GMR F
Sbjct: 2   AHALRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINRDKYHPGYFGKVGMRVF 61

Query: 182 HFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPXIN 304
           H  KN+++CP +N+++LW+LV ++ R K   A  GK P I+
Sbjct: 62  HLNKNQHYCPTVNVERLWSLVPQEVRDK---ATGGKSPVID 99


>AC087079-8|AAK27871.1|   88|Caenorhabditis elegans Hypothetical
           protein Y37E3.8b protein.
          Length = 88

 Score = 46.4 bits (105), Expect = 4e-06
 Identities = 20/45 (44%), Positives = 31/45 (68%)
 Frame = +2

Query: 170 MRNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPXIN 304
           MR FH  KN+++CP +N+++LW+LV ++ R K   A  GK P I+
Sbjct: 1   MRVFHLNKNQHYCPTVNVERLWSLVPQEVRDK---ATGGKSPVID 42


>Z77655-1|CAB01137.1|  393|Caenorhabditis elegans Hypothetical
           protein C56A3.1 protein.
          Length = 393

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 105 PALPRPPGCLRCFPIRPCP 49
           PA P+ P C  C P +PCP
Sbjct: 50  PACPQAPSCPVCPPPQPCP 68


>Z75550-7|CAA99925.2|  195|Caenorhabditis elegans Hypothetical
           protein T22C1.9 protein.
          Length = 195

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 5/69 (7%)
 Frame = +2

Query: 2   ATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMD-----KYHPGYFGKL 166
           +T  KK+ K  GH                   N GG   H + M+     ++ P  F KL
Sbjct: 127 STKSKKSEKDVGHDDHKKEDVHGDQKDDNKDRNDGGRDSHVVQMEHNSEEEHEPSGFKKL 186

Query: 167 GMRNFHFRK 193
           G   F+F+K
Sbjct: 187 GKSFFNFKK 195


>U58749-10|AAK18879.1|  465|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 224 protein.
          Length = 465

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
 Frame = +2

Query: 104 GGEHHHRINMDKYHPGYF-----GKLGMRN-FHFRKNKNFCPVLNLDKLW 235
           G E HH    D YHP  F      +L + N + F KNK +C     D+L+
Sbjct: 285 GVECHHHSTTDTYHPNCFRCETCRQLLVDNIYFFYKNKYYCGRHYADQLY 334


>U41995-1|AAA83459.1|  301|Caenorhabditis elegans Serpentine
           receptor, class x protein47 protein.
          Length = 301

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 220 VQNWTEILVLSKVEISHTKFAKVSR 146
           + NWT  L LSKV   H  F  ++R
Sbjct: 20  IANWTVFLFLSKVPSIHKSFGSLTR 44


>AC024817-17|AAU87811.1|  178|Caenorhabditis elegans C-type lectin
           protein 80 protein.
          Length = 178

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/48 (22%), Positives = 25/48 (52%)
 Frame = +2

Query: 164 LGMRNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPXINI 307
           LG  NF+++ ++++      +  WT  + +T LK+  +    +P  N+
Sbjct: 105 LGWTNFNYQNSQDYVAESVTNAKWTAYNSETELKFVCSYYPLMPTTNL 152


>U39472-5|AAK31393.1|  128|Caenorhabditis elegans Hypothetical
           protein B0304.4 protein.
          Length = 128

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = -3

Query: 307 NIDXGDLA-IWSRCILQPRLF 248
           N+  G L  IWSRCI QP  F
Sbjct: 17  NVQKGKLLNIWSRCIAQPSSF 37


>U28735-3|AAF99958.3|  467|Caenorhabditis elegans Glycosylation
           related protein 12,isoform a protein.
          Length = 467

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
 Frame = -2

Query: 101 HYHDLLD-AYGAFRYDHV---RD*HDLSAS*SSFLRW 3
           HY   LD A+  FRYDHV    D  D+     S+ RW
Sbjct: 151 HYKWALDKAFKGFRYDHVIVTEDDLDIGNDFFSYFRW 187


>U28735-2|AAM69111.1|  543|Caenorhabditis elegans Glycosylation
           related protein 12,isoform b protein.
          Length = 543

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
 Frame = -2

Query: 101 HYHDLLD-AYGAFRYDHV---RD*HDLSAS*SSFLRW 3
           HY   LD A+  FRYDHV    D  D+     S+ RW
Sbjct: 151 HYKWALDKAFKGFRYDHVIVTEDDLDIGNDFFSYFRW 187


>AF082011-1|AAD03023.1|  467|Caenorhabditis elegans
           UDP-N-acetylglucosamine:a-3-D-mannosideb-1,
           2-N-acetylglucosaminyltransferase I protein.
          Length = 467

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
 Frame = -2

Query: 101 HYHDLLD-AYGAFRYDHV---RD*HDLSAS*SSFLRW 3
           HY   LD A+  FRYDHV    D  D+     S+ RW
Sbjct: 151 HYKWALDKAFKGFRYDHVIVTEDDLDIGNDFFSYFRW 187


>Z81067-5|CAD92378.1|  965|Caenorhabditis elegans Hypothetical
           protein F23A7.7 protein.
          Length = 965

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -2

Query: 296 RGPCHLEQMHTSASSVQRLMSKAYLSSKLDR 204
           RGP H E+ +   + +QR+ S + L  ++ R
Sbjct: 30  RGPAHFEEFNQPITGIQRITSTSNLVPEVVR 60


>U97196-12|AAB52456.2|  564|Caenorhabditis elegans Hypothetical
           protein B0207.1 protein.
          Length = 564

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 114 CSPPALPRPPGCLRCFPIRP 55
           C PP +P PP   +  PI P
Sbjct: 123 CPPPPVPHPPQITQMAPILP 142


>AL161712-19|CAC70143.2|  261|Caenorhabditis elegans Hypothetical
           protein Y66D12A.24 protein.
          Length = 261

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 114 CSPPALPRPPGCLRCFPIRP 55
           C+PP+ P PP    C P +P
Sbjct: 55  CAPPSAPPPPPPEYCVPDQP 74


>AF040642-10|AAB94949.2|  576|Caenorhabditis elegans Hypothetical
           protein C50D2.1 protein.
          Length = 576

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 104 GGEHHHRINMDKYHPGYFGKLGMRNF 181
           G  HH +++   +  GY   LG+R+F
Sbjct: 401 GNGHHGKVDFGTWGGGYSDNLGVRDF 426


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,885,309
Number of Sequences: 27780
Number of extensions: 131890
Number of successful extensions: 347
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 344570176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)