Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304B02f
         (312 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g23290.1 68414.m02913 60S ribosomal protein L27A (RPL27aB) si...   111   7e-26
At1g70600.1 68414.m08133 60S ribosomal protein L27A (RPL27aC) id...   108   7e-25
At1g12960.1 68414.m01505 60S ribosomal protein L27A (RPL27aA) si...    44   2e-05
At2g16100.1 68415.m01846 hypothetical protein                          29   0.87 
At4g29090.1 68417.m04163 reverse transcriptase, putative / RNA-d...    27   2.0  
At2g39930.1 68415.m04907 isoamylase, putative / starch debranchi...    26   4.6  
At5g38920.1 68418.m04707 hypothetical protein                          25   8.1  

>At1g23290.1 68414.m02913 60S ribosomal protein L27A (RPL27aB)
           similar to 60S RIBOSOMAL PROTEIN L27A GB:P49637
           GI:1710530 from [Arabidopsis thaliana]
          Length = 146

 Score =  111 bits (268), Expect = 7e-26
 Identities = 55/102 (53%), Positives = 65/102 (63%)
 Frame = +2

Query: 2   ATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNF 181
           AT+ KK RK RGHVS                 NAGG HHHRI  DKYHPGYFGK+GMR F
Sbjct: 2   ATALKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYF 61

Query: 182 HFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPXINI 307
           H  +NK FCP++NLDKLW+LV E  + K  S+ D  VP I++
Sbjct: 62  HKLRNKFFCPIVNLDKLWSLVPEDVKAK--SSKD-NVPLIDV 100


>At1g70600.1 68414.m08133 60S ribosomal protein L27A (RPL27aC)
           identical to 60S ribosomal protein L27A GB:P49637
           [Arabidopsis thaliana]
          Length = 146

 Score =  108 bits (260), Expect = 7e-25
 Identities = 54/101 (53%), Positives = 62/101 (61%)
 Frame = +2

Query: 5   TSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFH 184
           T  KK RK RGHVS                 NAGG HHHRI  DKYHPGYFGK+GMR FH
Sbjct: 3   TRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFH 62

Query: 185 FRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPXINI 307
             +NK FCP++NLDKLW+LV E  + K  S  D  VP I++
Sbjct: 63  KLRNKFFCPIVNLDKLWSLVPEDVKAK--STKD-NVPLIDV 100


>At1g12960.1 68414.m01505 60S ribosomal protein L27A (RPL27aA)
           similar to GB:BAA96068 from [Panax ginseng]
          Length = 104

 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 31/82 (37%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
 Frame = +2

Query: 5   TSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGK--LGMRN 178
           TS+KKTR LR HVS                       H R    +  PG  G   +GMR 
Sbjct: 3   TSRKKTRNLREHVSVG---------------------HGRFGKHRKLPGSRGNAGVGMRY 41

Query: 179 FHFRKNKNFCPVLNLDKLWTLV 244
           FH  +NK +C ++NLDKLW++V
Sbjct: 42  FHKLRNKFYCQIVNLDKLWSMV 63


>At2g16100.1 68415.m01846 hypothetical protein 
          Length = 250

 Score = 28.7 bits (61), Expect = 0.87
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 112 APSQNQHGQVPSWILWQTW 168
           +P  +Q  Q+P WILW+ W
Sbjct: 20  SPRTSQFHQLPLWILWRIW 38


>At4g29090.1 68417.m04163 reverse transcriptase, putative /
           RNA-dependent DNA polymerase, putative similar to
           reverse transcriptase [Arabidopsis thaliana] GI:976278;
           contains Pfam profile PF00075: RNase H
          Length = 575

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 13/77 (16%)
 Frame = +1

Query: 115 PSQNQHGQVPSWILWQTWYEKFPL-*KEQEFLSSFELR*A---LDISL*TDEAEVC---- 270
           P   +  Q+  W+LW+ W  +  L  + +EF +   LR A   L+      EAE C    
Sbjct: 351 PQWEKASQLVPWLLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKP 410

Query: 271 -----ICSRWQGPRHQY 306
                 C RW+ P HQ+
Sbjct: 411 QVNRSSCGRWRPPPHQW 427


>At2g39930.1 68415.m04907 isoamylase, putative / starch debranching
           enzyme, putative similar to isoamylase from [Solanum
           tuberosum] GI:27728145, [Triticum aestivum] GI:17932898,
           [Hordeum vulgare] GI:21314275, [Oryza sativa]
           GI:3252794; contains Pfam profiles PF00128: Alpha
           amylase catalytic domain, PF02922: Isoamylase N-terminal
           domain
          Length = 783

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = +1

Query: 106 W*APSQNQHGQVPSWILWQTWYEKF 180
           W A    Q G  P W +W  W  KF
Sbjct: 468 WDAGGLYQVGMFPHWGIWSEWNGKF 492


>At5g38920.1 68418.m04707 hypothetical protein
          Length = 192

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +1

Query: 115 PSQNQHGQVPSWILWQTW 168
           P     G V  WILW+ W
Sbjct: 12  PQLGDDGMVAPWILWRLW 29


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,518,693
Number of Sequences: 28952
Number of extensions: 124176
Number of successful extensions: 292
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 331449360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)