Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304A12f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch...    40   2e-04
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    37   0.002
SPBC3F6.01c |||serine/threonine protein phosphatase |Schizosacch...    36   0.004
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi...    36   0.005
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe...    27   1.7  
SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos...    27   2.2  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    25   5.2  
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi...    25   5.2  
SPAC25B8.17 |||peptidase family A22|Schizosaccharomyces pombe|ch...    25   6.8  
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi...    25   6.8  
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr...    25   9.0  
SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po...    25   9.0  

>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 4/88 (4%)
 Frame = +1

Query: 211 GRDFLARGQLSDALTHYHAAVEGDPHNYLT----YFKRGTVYYALGKAKFALQDFSKVLE 378
           G D   +G   DA   Y  A++ DP N  T    Y  R TV   L + + AL D    L 
Sbjct: 230 GNDLFRQGNYQDAYEKYSEALQIDPDNKETVAKLYMNRATVLLRLKRPEEALSDSDNALA 289

Query: 379 LKSDFTSARLQRANVYLKLAQYTDAKND 462
           + S +      RA  +  L ++ +A  D
Sbjct: 290 IDSSYLKGLKVRAKAHEALEKWEEAVRD 317



 Score = 33.5 bits (73), Expect = 0.020
 Identities = 25/94 (26%), Positives = 37/94 (39%), Gaps = 12/94 (12%)
 Frame = +1

Query: 262 HAAVEGDPHNYLTYFKRGTVYYALGKAKFALQDFSKVLELKSDFTSARL----------- 408
           H  +  +P N      RG V Y  G+   A+  F + L+L  D T+A+            
Sbjct: 167 HDVLRLNPKNVEALVLRGKVMYYSGENAKAITHFQEALKLDPDCTTAKTLFKQVRKLENT 226

Query: 409 -QRANVYLKLAQYTDAKNDYLEVTYADPYNEEAI 507
             + N   +   Y DA   Y E    DP N+E +
Sbjct: 227 KNQGNDLFRQGNYQDAYEKYSEALQIDPDNKETV 260



 Score = 25.0 bits (52), Expect = 6.8
 Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 16/100 (16%)
 Frame = +1

Query: 211 GRDFLARGQLSDALTHYHAAVEGDPH--NYLTYFK----------RGTVYYALGKAKFAL 354
           G+     G+ + A+TH+  A++ DP      T FK          +G   +  G  + A 
Sbjct: 184 GKVMYYSGENAKAITHFQEALKLDPDCTTAKTLFKQVRKLENTKNQGNDLFRQGNYQDAY 243

Query: 355 QDFSKVLELKSD--FTSARL--QRANVYLKLAQYTDAKND 462
           + +S+ L++  D   T A+L   RA V L+L +  +A +D
Sbjct: 244 EKYSEALQIDPDNKETVAKLYMNRATVLLRLKRPEEALSD 283


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 36.7 bits (81), Expect = 0.002
 Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 1/97 (1%)
 Frame = +1

Query: 208 LGRDFLARGQLSDALTHYHAAVEGDPHNYLTYFKRGTVYYALGKAKFALQDFSKVLELKS 387
           +GR ++A+ + + A   Y  AV  D  N   +   G +YY + + + AL  +S+ + L  
Sbjct: 590 IGRCYVAQQKYNKAYEAYQQAVYRDGRNPTFWCSIGVLYYQINQYQDALDAYSRAIRLNP 649

Query: 388 DFTSARLQRANVYLKL-AQYTDAKNDYLEVTYADPYN 495
             +        +Y     Q +DA + Y      DP N
Sbjct: 650 YISEVWYDLGTLYESCHNQISDALDAYQRAAELDPTN 686



 Score = 24.6 bits (51), Expect = 9.0
 Identities = 17/85 (20%), Positives = 35/85 (41%)
 Frame = +1

Query: 247 ALTHYHAAVEGDPHNYLTYFKRGTVYYALGKAKFALQDFSKVLELKSDFTSARLQRANVY 426
           A+ +   ++E D  +  +++  G  Y A  K   A + + + +       +       +Y
Sbjct: 569 AIQYLTKSLEADDTDAQSWYLIGRCYVAQQKYNKAYEAYQQAVYRDGRNPTFWCSIGVLY 628

Query: 427 LKLAQYTDAKNDYLEVTYADPYNEE 501
            ++ QY DA + Y      +PY  E
Sbjct: 629 YQINQYQDALDAYSRAIRLNPYISE 653


>SPBC3F6.01c |||serine/threonine protein phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 35.9 bits (79), Expect = 0.004
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
 Frame = +1

Query: 247 ALTHYHAAVEGDPHNYLTYFKRGTVYYALGKAKFALQDFSKVLELKSDFTSAR--LQRAN 420
           A+     A+E DP     YF+R T + A+ + K A+ DF K L L     +AR  L+   
Sbjct: 58  AINDASKAIECDPEYAKAYFRRATAHIAIFQPKEAVGDFRKALALAPSDPAARKKLRECE 117

Query: 421 VYLKLAQYTDA 453
             +K  ++ +A
Sbjct: 118 QLVKRIRFQEA 128


>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 35.5 bits (78), Expect = 0.005
 Identities = 20/80 (25%), Positives = 40/80 (50%)
 Frame = +1

Query: 208 LGRDFLARGQLSDALTHYHAAVEGDPHNYLTYFKRGTVYYALGKAKFALQDFSKVLELKS 387
           LG+ +  +G L  A+  ++ +++ +P +Y T+F  G     L K   A++ FS+ L +  
Sbjct: 527 LGKYYYKKGDLLQAMNCFNESLKINPLSYPTWFTYGCAALELQKYDAAMEAFSRCLSINP 586

Query: 388 DFTSARLQRANVYLKLAQYT 447
           +   +    A+  LK   +T
Sbjct: 587 EDGESWNNLASAMLKAKDHT 606


>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +1

Query: 370 VLELKSDFTSARLQRANVYLKLAQYTDAKNDYLEVTYADPYNEE 501
           +L  K D   ARL    + +KL   T  ++DYL +    PY  +
Sbjct: 386 MLPKKLDEEVARLHLGKLGVKLTTLTSVQSDYLGIPVDGPYKAD 429


>SPBC215.03c |csn1||COP9/signalosome complex subunit
           Csn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 422

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
 Frame = -3

Query: 348 EFCFSEGIIHCTSLEVCKIVVWISFDSCVIM--SQSVRELSSSQEVSTQL 205
           E+C + G I   SLE+ +I +WI   S V+   S++   +S++ E+++ +
Sbjct: 140 EYCTNAGQIAHLSLELMRISIWIGNYSHVLAFGSRAKSTVSAAMELTSPI 189


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1272

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = +1

Query: 319  VYYALGKAKFALQDFSKVLELKSDFTSARLQRANVYLKLAQYTDAKNDYLEVT 477
            V +     K+ L DF+KV+       S RLQ  ++ +    Y    + Y E T
Sbjct: 951  VCFVRNSLKYLLDDFTKVITKTFSIKSIRLQFLSLIIYEITYEQLSSWYRERT 1003


>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
           Usp107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +1

Query: 328 ALGKAKF-ALQDFSKVLELKSDFTSARLQRANVYLKLAQYTDAKNDYL 468
           + G A+F + + FS+ LE  +DF    L       +L+  TD +N+ L
Sbjct: 180 SFGFAEFESNEQFSRALEALNDFVVPPLYEGGPSTRLSLITDVENEGL 227


>SPAC25B8.17 |||peptidase family A22|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 295

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
 Frame = +1

Query: 256 HYHAAVEGDPHNYLTYFKRGTVYY--ALGKAKFALQDF 363
           HY+      P  + TYF+   + Y   LG   FAL  F
Sbjct: 207 HYYINSTSQPKKHSTYFRNTFIAYGLGLGVTNFALYYF 244


>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
           spliced|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +1

Query: 280 DPHNYLTYFKRGTVYYALGKAKFALQDFSKVLELKSDFTSARLQRANVYLKLAQY 444
           +P++    ++RG  Y  LG    A +D+   LEL  D  +  +Q++   LK   Y
Sbjct: 71  NPYDKKVIWRRGLAYLRLGHPHLANRDWEHSLEL--DPNNTYIQKSLHRLKEVYY 123


>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1250

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 259 YHAAVEGDPHNYLTYFKRGT 318
           +H  V  DP++YLT  K GT
Sbjct: 790 HHKEVLNDPNSYLTVRKSGT 809


>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +1

Query: 190 VNKHLELGRDFLARGQLSDALTHYHAAVEGDPHNYLTYFKR-GTVYYALG 336
           V K+LEL + +     + +A  H H  ++ D      +F    TV+  LG
Sbjct: 25  VTKNLELFKKYDDINLIKEAYNHVHKLIQKDERYTAVFFAHDSTVFSYLG 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,817,495
Number of Sequences: 5004
Number of extensions: 31552
Number of successful extensions: 101
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)