Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304A12f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59454| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 7e-08
SB_42340| Best HMM Match : DnaJ (HMM E-Value=3.2e-32) 54 7e-08
SB_22290| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 8e-06
SB_45140| Best HMM Match : RVT_1 (HMM E-Value=3.8e-32) 44 6e-05
SB_29438| Best HMM Match : TPR_2 (HMM E-Value=3.8e-36) 44 1e-04
SB_44774| Best HMM Match : TPR_2 (HMM E-Value=6.3e-15) 42 2e-04
SB_40767| Best HMM Match : TPR_2 (HMM E-Value=3.2e-10) 42 4e-04
SB_27046| Best HMM Match : TPR_1 (HMM E-Value=3.7e-10) 41 7e-04
SB_58934| Best HMM Match : TPR_1 (HMM E-Value=3.8e-37) 38 0.004
SB_2828| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.004
SB_16367| Best HMM Match : TPR_1 (HMM E-Value=0) 37 0.009
SB_20575| Best HMM Match : TPR_1 (HMM E-Value=0) 34 0.062
SB_19825| Best HMM Match : TPR_2 (HMM E-Value=4.8e-30) 34 0.082
SB_8404| Best HMM Match : TPR_1 (HMM E-Value=0) 34 0.082
SB_56512| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 33 0.11
SB_50860| Best HMM Match : TPR_1 (HMM E-Value=0) 33 0.14
SB_49858| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.25
SB_22125| Best HMM Match : TPR_1 (HMM E-Value=7.7e-13) 32 0.33
SB_35701| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.58
SB_54763| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_51502| Best HMM Match : TPR_2 (HMM E-Value=0) 30 1.3
SB_11617| Best HMM Match : TPR_1 (HMM E-Value=0) 30 1.3
SB_5761| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_44772| Best HMM Match : TPR_2 (HMM E-Value=0) 29 1.8
SB_6794| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_38427| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_21748| Best HMM Match : TPR_1 (HMM E-Value=0) 29 2.3
SB_55575| Best HMM Match : TPR_1 (HMM E-Value=2.4e-07) 29 2.3
SB_51830| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_21449| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_39440| Best HMM Match : TPR_2 (HMM E-Value=6.3e-15) 28 4.1
SB_21064| Best HMM Match : TPR_2 (HMM E-Value=3.5e-09) 28 4.1
SB_38919| Best HMM Match : Fumarate_red_D (HMM E-Value=4.7) 28 4.1
SB_6548| Best HMM Match : Helicase_C (HMM E-Value=0.003) 28 5.4
SB_28698| Best HMM Match : TPR_2 (HMM E-Value=0.00019) 27 7.1
SB_56862| Best HMM Match : TPR_2 (HMM E-Value=1.4e-22) 27 7.1
SB_54632| Best HMM Match : TPR_1 (HMM E-Value=1.4e-20) 27 9.4
SB_48719| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_42965| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_29745| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.04) 27 9.4
>SB_59454| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 54.0 bits (124), Expect = 7e-08
Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
Frame = +1
Query: 211 GRDFLARGQLSDALTHYHAAVEGDPHNYLT----YFKRGTVYYALGKAKFALQDFSKVLE 378
G D G A Y A+E DP N T Y+ R V LGK A++D ++ +
Sbjct: 40 GNDAFTGGHYQKAYELYTEALEIDPKNKSTNAKLYYNRAVVGSKLGKNDQAIEDCTQAMN 99
Query: 379 LKSDFTSARLQRANVYLKLAQYTDAKNDYLEVTYADPYNEE 501
L +T A L+RAN Y++ +Y +A DY + D + E
Sbjct: 100 LDHTYTKAYLKRANCYMESEKYEEAVRDYESLCKKDRSSRE 140
>SB_42340| Best HMM Match : DnaJ (HMM E-Value=3.2e-32)
Length = 264
Score = 54.0 bits (124), Expect = 7e-08
Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
Frame = +1
Query: 211 GRDFLARGQLSDALTHYHAAVEGDPHNYLT----YFKRGTVYYALGKAKFALQDFSKVLE 378
G D G A Y A+E DP N T Y+ R V LGK A++D ++ +
Sbjct: 40 GNDAFTGGHYQKAYELYTEALEIDPKNKSTNAKLYYNRAVVGSKLGKNDQAIEDCTQAMN 99
Query: 379 LKSDFTSARLQRANVYLKLAQYTDAKNDYLEVTYADPYNEE 501
L +T A L+RAN Y++ +Y +A DY + D + E
Sbjct: 100 LDHTYTKAYLKRANCYMESEKYEEAVRDYESLCKKDRSSRE 140
>SB_22290| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 485
Score = 47.2 bits (107), Expect = 8e-06
Identities = 29/107 (27%), Positives = 46/107 (42%)
Frame = +1
Query: 181 QAEVNKHLELGRDFLARGQLSDALTHYHAAVEGDPHNYLTYFKRGTVYYALGKAKFALQD 360
+A+ K + G L+ G A+ Y A+ DP N++ Y R + L K AL+D
Sbjct: 6 KAKAAKLKDQGNAALSAGDTQKAIEFYTEAILLDPANHVFYSNRSAAFAKLSKYNEALED 65
Query: 361 FSKVLELKSDFTSARLQRANVYLKLAQYTDAKNDYLEVTYADPYNEE 501
K +E+K D+ + Y L Y A+ + DP N +
Sbjct: 66 ARKCVEIKPDWGKGYSRLGTAYSFLKMYQKAEEAFTTGLRHDPNNAQ 112
>SB_45140| Best HMM Match : RVT_1 (HMM E-Value=3.8e-32)
Length = 868
Score = 44.4 bits (100), Expect = 6e-05
Identities = 22/81 (27%), Positives = 37/81 (45%)
Frame = +1
Query: 211 GRDFLARGQLSDALTHYHAAVEGDPHNYLTYFKRGTVYYALGKAKFALQDFSKVLELKSD 390
G D G+ A++ Y A+ G P+N++ Y R Y + L D + + LK D
Sbjct: 507 GNDHFNHGKYKAAISAYTLAISGAPYNHILYGNRAQSYLKSEDLREGLTDGRRAVVLKPD 566
Query: 391 FTSARLQRANVYLKLAQYTDA 453
+T + + A + +L Y A
Sbjct: 567 WTKGQFRYAQAFFELGYYERA 587
>SB_29438| Best HMM Match : TPR_2 (HMM E-Value=3.8e-36)
Length = 1021
Score = 43.6 bits (98), Expect = 1e-04
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Frame = +1
Query: 211 GRDFLARGQLSDALTHYHAAVEGDPHN-YLTYFKRGTVYYALGKAKFALQDFSKVLELKS 387
G + R A++++ A+ P + Y +RG Y+ L K + ALQDF+ VL ++
Sbjct: 615 GLRLVGRDNDGAAVSYFTLAIILSPKQAWEAYHQRGKRYFKLKKPRHALQDFTAVLSMRP 674
Query: 388 DFTSARLQRANVYLKLAQYTDAKNDYL 468
A RA + L +Y +A D+L
Sbjct: 675 KHIEALCGRAVINLTACKYQEAVGDFL 701
>SB_44774| Best HMM Match : TPR_2 (HMM E-Value=6.3e-15)
Length = 206
Score = 42.3 bits (95), Expect = 2e-04
Identities = 26/103 (25%), Positives = 47/103 (45%)
Frame = +1
Query: 196 KHLELGRDFLARGQLSDALTHYHAAVEGDPHNYLTYFKRGTVYYALGKAKFALQDFSKVL 375
K E R++ + +S A+ Y A+E PH Y R Y + AL+D +
Sbjct: 37 KKAEGNREYGLKNYVS-AIALYSKAIEFAPHVATFYGNRSAAYMMISNYDKALEDALLSI 95
Query: 376 ELKSDFTSARLQRANVYLKLAQYTDAKNDYLEVTYADPYNEEA 504
E+ ++F + A +L + ++A + +V DP N++A
Sbjct: 96 EIDNNFVKGHYRAAKCHLAMGSASNALREIRKVLELDPKNKDA 138
>SB_40767| Best HMM Match : TPR_2 (HMM E-Value=3.2e-10)
Length = 452
Score = 41.5 bits (93), Expect = 4e-04
Identities = 21/69 (30%), Positives = 36/69 (52%)
Frame = +1
Query: 247 ALTHYHAAVEGDPHNYLTYFKRGTVYYALGKAKFALQDFSKVLELKSDFTSARLQRANVY 426
A+ Y+ ++ P NY ++ +R T + +L K + +L DF + ++L + L R
Sbjct: 303 AIDLYNKSILASPINYFSWCQRATAFISLNKYEESLLDFEECIKLNPKWVKGYLFRGLSQ 362
Query: 427 LKLAQYTDA 453
L L QY DA
Sbjct: 363 LHLRQYKDA 371
>SB_27046| Best HMM Match : TPR_1 (HMM E-Value=3.7e-10)
Length = 98
Score = 40.7 bits (91), Expect = 7e-04
Identities = 23/62 (37%), Positives = 32/62 (51%)
Frame = +1
Query: 232 GQLSDALTHYHAAVEGDPHNYLTYFKRGTVYYALGKAKFALQDFSKVLELKSDFTSARLQ 411
G +A+ Y AA+ +P L+Y+ G VY+ + K AL F+K L D SA L
Sbjct: 34 GDYVNAVRDYQAAIRLEPSYALSYYNAGNVYFRQRQFKQALSYFNKALSWIGDDESAVLN 93
Query: 412 RA 417
RA
Sbjct: 94 RA 95
>SB_58934| Best HMM Match : TPR_1 (HMM E-Value=3.8e-37)
Length = 1632
Score = 38.3 bits (85), Expect = 0.004
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +1
Query: 208 LGRDFLARGQLSDALTHYHAAVEGDPHNYLTYFKRGTVYYALGKAKFALQDFSKVLEL 381
LG +++ +L A++ Y A+ DP +Y ++ G +YY K A F K L +
Sbjct: 1407 LGHEYVLTEELDRAMSCYRMAIRSDPRHYNAWYGVGMIYYKQEKFNLAEVHFRKALSI 1464
>SB_2828| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1555
Score = 38.3 bits (85), Expect = 0.004
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 12/105 (11%)
Frame = +1
Query: 187 EVNKHLELGRDFLARGQLSDALTHYHAAVE-----GDPHNYL-TYFKRGTVYYALGKAKF 348
+ N +LE+G ++G+ DA+ +Y A+ GD Y G V+ + GK +
Sbjct: 461 QANAYLEMGEVHSSQGKYEDAMNNYQHALSLFQKTGDESGQAHAYHGMGDVHKSEGKYED 520
Query: 349 ALQDFSKVLEL--KSDFTSARLQ----RANVYLKLAQYTDAKNDY 465
A+ ++ + L L K+ S+R + +V+L +Y DA N+Y
Sbjct: 521 AMNNYQRALSLFQKTGDESSRAKAYHGMGDVHLNKGKYEDAMNNY 565
Score = 35.1 bits (77), Expect = 0.035
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 12/105 (11%)
Frame = +1
Query: 187 EVNKHLELGRDFLARGQLSDALTHYHAAVE-----GDPHNY-LTYFKRGTVYYALGKAKF 348
+ N +LE+G +G+ DA+ +Y A+ GD Y G V+ GK +
Sbjct: 301 QANAYLEMGEVHSFQGKYEDAMNNYQHALSLFQKTGDESGQAYAYLGMGNVHKPQGKYED 360
Query: 349 ALQDFSKVLEL------KSDFTSARLQRANVYLKLAQYTDAKNDY 465
A+ ++ L L +SD +A L V+ +Y DA N++
Sbjct: 361 AMNNYQHALSLFQKTGDESDQANAYLGMGEVHSFQGKYEDAMNNF 405
Score = 31.5 bits (68), Expect = 0.44
Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 12/105 (11%)
Frame = +1
Query: 187 EVNKHLELGRDFLARGQLSDALT---HYHAAVE--GDPHNYLT-YFKRGTVYYALGKAKF 348
+ N +L +G +G+ DA+ H H+ + GD Y G V+ GK +
Sbjct: 381 QANAYLGMGEVHSFQGKYEDAMNNFQHAHSLFQKTGDDSGQANAYLGMGEVHSFQGKYED 440
Query: 349 ALQDFSKVLEL------KSDFTSARLQRANVYLKLAQYTDAKNDY 465
A+ ++ + L SD +A L+ V+ +Y DA N+Y
Sbjct: 441 AMNNYQHAVSLFQKTGDVSDQANAYLEMGEVHSSQGKYEDAMNNY 485
Score = 29.5 bits (63), Expect = 1.8
Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 12/105 (11%)
Frame = +1
Query: 187 EVNKHLELGRDFLARGQLSDALTHYHAAVE------GDPHNYLTYFKRGTVYYALGKAKF 348
+ N +L +G +G+ DA+ +Y A+ + Y G V+ GK +
Sbjct: 221 QANAYLGMGEVHSFQGKYEDAMNNYQHALSLFQKTGNESSRAKAYHGMGDVHLNKGKYED 280
Query: 349 ALQDFSKVLEL------KSDFTSARLQRANVYLKLAQYTDAKNDY 465
A+ + + L SD +A L+ V+ +Y DA N+Y
Sbjct: 281 AMNIYQHAVSLFQKTGDVSDQANAYLEMGEVHSFQGKYEDAMNNY 325
Score = 28.7 bits (61), Expect = 3.1
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Frame = +1
Query: 277 GDPHNYLTYFKRGTVYYALGKAKFALQDFSKVLEL------KSDFTSARLQRANVYLKLA 438
G P Y G V+ GK + A+ ++ L L +SD +A L V+
Sbjct: 137 GTPFAGFAYLGMGEVHSFQGKYQDAMNNYQHALSLFQKTGDESDQANAYLGMGEVHKSEV 196
Query: 439 QYTDAKNDY 465
+Y DA N+Y
Sbjct: 197 KYEDAMNNY 205
>SB_16367| Best HMM Match : TPR_1 (HMM E-Value=0)
Length = 635
Score = 37.1 bits (82), Expect = 0.009
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 12/105 (11%)
Frame = +1
Query: 187 EVNKHLELGRDFLARGQLSDALTHYHAAVE-----GDPH-NYLTYFKRGTVYYALGKAKF 348
+ +L +G+ +G+ DAL +Y A+ GD +Y G V+ + GK +
Sbjct: 417 QAKAYLSMGKVHFNQGKYEDALNNYQHALSLFRKTGDESCQAKSYLGMGKVHRSHGKYED 476
Query: 349 ALQDFSKVLEL------KSDFTSARLQRANVYLKLAQYTDAKNDY 465
A+ ++ + L L +S +A L NV+ A+Y DA N+Y
Sbjct: 477 AMNNYQQALSLFRKTGDESGQANAYLGMGNVHRSQAKYEDALNNY 521
Score = 33.1 bits (72), Expect = 0.14
Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 12/105 (11%)
Frame = +1
Query: 187 EVNKHLELGRDFLARGQLSDALTHYHAAVE-----GDPH-NYLTYFKRGTVYYALGKAKF 348
+ N +L +G ++ + DAL +Y A+ GD Y G V+ GK +
Sbjct: 497 QANAYLGMGNVHRSQAKYEDALNNYQHALSLFQKTGDESCQAKAYHGMGNVHKDQGKYED 556
Query: 349 ALQDFSKVLEL------KSDFTSARLQRANVYLKLAQYTDAKNDY 465
AL ++ L L +S +A L NV+ +Y DA N+Y
Sbjct: 557 ALNNYQHALSLFQKTGDESGQANAYLGMGNVHRSHGKYEDAMNNY 601
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +1
Query: 301 YFKRGTVYYALGKAKFALQDFSKVLELKSDFTSARLQRANVYLKLAQYTDAKNDY 465
++ +G A+ + AL F + + +SD +A NVY +Y DA N+Y
Sbjct: 187 HWSQGKYEDAMNNYQHALVYFKRQIGDESDQANAYHGMGNVYNDQGKYEDAMNNY 241
>SB_20575| Best HMM Match : TPR_1 (HMM E-Value=0)
Length = 1106
Score = 34.3 bits (75), Expect = 0.062
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 12/98 (12%)
Frame = +1
Query: 208 LGRDFLARGQLSDALTHYHAAVE-----GDPHNYLT-YFKRGTVYYALGKAKFALQDFSK 369
+G ++G+ DA+ +Y A+ GD Y G VY + GK + A+ F
Sbjct: 1 MGNVHWSQGKYEDAMNNYQHALSLFQKTGDESGQANAYLGMGVVYRSQGKYEDAMNIFKH 60
Query: 370 VLEL------KSDFTSARLQRANVYLKLAQYTDAKNDY 465
L + +SD +A NVY +Y DA N+Y
Sbjct: 61 ALSIFQKIGDESDQANAYHGMGNVYNDQGKYEDAMNNY 98
Score = 32.7 bits (71), Expect = 0.19
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 12/101 (11%)
Frame = +1
Query: 199 HLELGRDFLARGQLSDALTHYHAAVE-----GDPHNYLT-YFKRGTVYYALGKAKFALQD 360
+L +G + +G+ D + +Y A+ GD Y G V+ GK + A+ +
Sbjct: 238 YLSMGEVHMFQGKYEDVMNNYQHALSLLQKTGDESGQANAYLGMGKVHSFQGKYEDAMNN 297
Query: 361 FSKVLEL------KSDFTSARLQRANVYLKLAQYTDAKNDY 465
+ + L L +S SA L V+ A+Y DA N+Y
Sbjct: 298 YQQALSLFQKTGDESGQASAYLGMGKVHKSQAKYEDALNNY 338
>SB_19825| Best HMM Match : TPR_2 (HMM E-Value=4.8e-30)
Length = 592
Score = 33.9 bits (74), Expect = 0.082
Identities = 20/63 (31%), Positives = 29/63 (46%)
Frame = +1
Query: 274 EGDPHNYLTYFKRGTVYYALGKAKFALQDFSKVLELKSDFTSARLQRANVYLKLAQYTDA 453
EG ++ TY G V + + + AL +S LELK + R+ YLKL + A
Sbjct: 10 EGPKSSFSTYLAEGDVLFKQEEYQKALDSYSLALELKPTDPFCLVARSKCYLKLGKNDAA 69
Query: 454 KND 462
D
Sbjct: 70 YRD 72
Score = 32.7 bits (71), Expect = 0.19
Identities = 23/95 (24%), Positives = 35/95 (36%)
Frame = +1
Query: 160 EFSECATQAEVNKHLELGRDFLARGQLSDALTHYHAAVEGDPHNYLTYFKRGTVYYALGK 339
E E ++ + +L G + + AL Y A+E P + R Y LGK
Sbjct: 6 EEQEEGPKSSFSTYLAEGDVLFKQEEYQKALDSYSLALELKPTDPFCLVARSKCYLKLGK 65
Query: 340 AKFALQDFSKVLELKSDFTSARLQRANVYLKLAQY 444
A +D LE DF Q+A + +
Sbjct: 66 NDAAYRDAEAALEEDKDFNKGLYQKAEALYAMGDF 100
>SB_8404| Best HMM Match : TPR_1 (HMM E-Value=0)
Length = 1981
Score = 33.9 bits (74), Expect = 0.082
Identities = 20/98 (20%), Positives = 42/98 (42%)
Frame = +1
Query: 217 DFLARGQLSDALTHYHAAVEGDPHNYLTYFKRGTVYYALGKAKFALQDFSKVLELKSDFT 396
D ++G A+ Y A++ DP+N++ Y R + + AL+D K EL +
Sbjct: 31 DACSKGDFQKAVELYSEAIKLDPNNHVLYGNRSAACIRTWQLEQALEDGKKAAELNPLWP 90
Query: 397 SARLQRANVYLKLAQYTDAKNDYLEVTYADPYNEEAIN 510
A ++ + ++ +A + D + + +N
Sbjct: 91 KAHYRQGVALQCMGRHAEALAAFATALAQDEKSPQLLN 128
>SB_56512| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 1219
Score = 33.5 bits (73), Expect = 0.11
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +1
Query: 226 ARGQLSDALTHYHAAVEGDPHNYLTYFKRGTVYYALGKAKF 348
A+ +SD +THY + +G +TY R ++ + +G A+F
Sbjct: 339 AKDFISDLITHYKVSPDGTHFGIITYSTRPSLQFTIGDARF 379
>SB_50860| Best HMM Match : TPR_1 (HMM E-Value=0)
Length = 933
Score = 33.1 bits (72), Expect = 0.14
Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 12/105 (11%)
Frame = +1
Query: 187 EVNKHLELGRDFLARGQLSDALTHYHAAVE-----GDPHNYL-TYFKRGTVYYALGKAKF 348
+ + +L +G ++G+ DA+ +Y A+ GD Y G V+ + GK +
Sbjct: 434 QASAYLGMGFVHSSQGKYEDAMNNYQHALSLFQKTGDESGQAKAYLGMGVVHRSQGKYED 493
Query: 349 ALQDFSKVLEL------KSDFTSARLQRANVYLKLAQYTDAKNDY 465
A+ ++ L L +S A L NV+ +Y DA N+Y
Sbjct: 494 AMNNYQHALSLFQKTGDESGQAKAYLGMGNVHRSQGKYEDAMNNY 538
>SB_49858| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 927
Score = 32.3 bits (70), Expect = 0.25
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = +1
Query: 208 LGRDFLARGQLSDALTHYHAAVEGDPHNYLTYFKRGTVYYALGKAKFALQDFSKVLE 378
LG F RGQL DAL +Y AV+ P Y A G + A+ ++ L+
Sbjct: 121 LGNVFKERGQLKDALANYRHAVKLKPDFIDGYINLAAALVAAGDLEGAVHAYATALQ 177
>SB_22125| Best HMM Match : TPR_1 (HMM E-Value=7.7e-13)
Length = 452
Score = 31.9 bits (69), Expect = 0.33
Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 5/96 (5%)
Frame = +1
Query: 190 VNKHLELGRDFLARGQLSDALTHYHAAVEGDPHNYLTYFKRGTVYYALG-----KAKFAL 354
V+K + L G + DA++++ ++ P + RGT Y G + A+
Sbjct: 50 VDKEVAHAISLLGCGDIDDAISYFTKIIKEHPKVTSAFLGRGTAYVKKGIQIKENSDAAI 109
Query: 355 QDFSKVLELKSDFTSARLQRANVYLKLAQYTDAKND 462
DFS V+ ++RA V + + +A D
Sbjct: 110 SDFSTVISHSPKNPEGWIRRAEVLSPIGRIPEAIKD 145
>SB_35701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 540
Score = 31.1 bits (67), Expect = 0.58
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 247 ALTHYHAAVEGDPHNYLTYFKRGTVYYALGKAKFALQDFSKVLE 378
AL + A++ D Y++R T ALGK K +L+D+ V++
Sbjct: 240 ALADANKAIQLDRKYIKGYYRRATANMALGKFKLSLKDYEMVVK 283
>SB_54763| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1190
Score = 29.9 bits (64), Expect = 1.3
Identities = 20/71 (28%), Positives = 31/71 (43%)
Frame = +1
Query: 199 HLELGRDFLARGQLSDALTHYHAAVEGDPHNYLTYFKRGTVYYALGKAKFALQDFSKVLE 378
HL + L G + + A++ D N F+RG L + + +DF++VLE
Sbjct: 1021 HLNIAACHLKLGNNFKCIKACNKALDIDKENIKALFRRGKALLNLKDYEKSKEDFTQVLE 1080
Query: 379 LKSDFTSARLQ 411
L AR Q
Sbjct: 1081 LDPKNREAREQ 1091
>SB_51502| Best HMM Match : TPR_2 (HMM E-Value=0)
Length = 1161
Score = 29.9 bits (64), Expect = 1.3
Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 12/98 (12%)
Frame = +1
Query: 208 LGRDFLARGQLSDALTHYHAAVE-----GDPHNYL-TYFKRGTVYYALGKAKFALQDFSK 369
+G + + G+ DA+ +Y A+ GD Y G V GK + A+ ++
Sbjct: 264 MGNVYRSHGKYEDAMNNYQHALSLFQKTGDESGQAEAYHGMGKVQSFQGKYEDAMNNYQH 323
Query: 370 VLEL------KSDFTSARLQRANVYLKLAQYTDAKNDY 465
L L +S A L NV+ +Y DA N+Y
Sbjct: 324 ALSLFQKTGDESGQAKAYLGMGNVHRSQGKYEDAMNNY 361
Score = 28.7 bits (61), Expect = 3.1
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 6/99 (6%)
Frame = +1
Query: 187 EVNKHLELGRDFLARGQLSDALTHYHAAVEGDPHNYLTYFKRGTVYYALGKAKFALQDFS 366
+ N +L +G +G+ DA+ +Y A+ T + G + K + A+ ++
Sbjct: 186 QANAYLGMGSVHFNQGKYEDAMNNYQQALSLFQK---TGDESGQANATMAKYEDAMNNYQ 242
Query: 367 KVLEL--KSDFTSARLQR----ANVYLKLAQYTDAKNDY 465
VL L K+ S + + NVY +Y DA N+Y
Sbjct: 243 HVLSLFQKTGDVSGQAKAYHGMGNVYRSHGKYEDAMNNY 281
>SB_11617| Best HMM Match : TPR_1 (HMM E-Value=0)
Length = 318
Score = 29.9 bits (64), Expect = 1.3
Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 12/101 (11%)
Frame = +1
Query: 199 HLELGRDFLARGQLSDALTHYHAAV------EGDPHNYLTYFKRGTVYYALGKAKFALQD 360
+L +G+ ++G+ D L +Y A+ + + Y G V+ + GK + A+ +
Sbjct: 38 YLGIGKVHRSQGKYEDTLNNYQHALSLFQKTDDECGQAKAYLGMGGVHKSQGKYEDAINN 97
Query: 361 FSKVLEL------KSDFTSARLQRANVYLKLAQYTDAKNDY 465
+ L L +S A L V++ A+Y DA N+Y
Sbjct: 98 CQRALSLFKKTGDESGQAMAYLGMGKVHMSQAKYEDALNNY 138
>SB_5761| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 887
Score = 29.9 bits (64), Expect = 1.3
Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 12/101 (11%)
Frame = +1
Query: 199 HLELGRDFLARGQLSDALTHYHAAVE-----GDPHNYLT-YFKRGTVYYALGKAKFALQD 360
+L +G + + + D + +Y A+ GD Y G V GK + A+ +
Sbjct: 73 YLSMGEVHMFQAKYGDVMNNYQHALSLLQKTGDESGQANAYLGMGKVQSFQGKYEDAMNN 132
Query: 361 FSKVLEL------KSDFTSARLQRANVYLKLAQYTDAKNDY 465
+ + L L +S SA L V+ A+Y DA N+Y
Sbjct: 133 YQQALSLFQKTGDESGQASAYLSMGGVHKSQAKYEDALNNY 173
>SB_44772| Best HMM Match : TPR_2 (HMM E-Value=0)
Length = 845
Score = 29.5 bits (63), Expect = 1.8
Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 6/99 (6%)
Frame = +1
Query: 193 NKHLELGRDFLARGQLSDALTHYHAAVEGDPHNY------LTYFKRGTVYYALGKAKFAL 354
N H + G+ ARG +ALT Y + H +T+ +G A+G K AL
Sbjct: 519 NTHYQQGKYEEARGHSKEALTLYQKTSDDQGHGEAHLLIGITHNLQGKYEEAIGHYKEAL 578
Query: 355 QDFSKVLELKSDFTSARLQRANVYLKLAQYTDAKNDYLE 471
+ + K + + A L +++ + +Y +A Y E
Sbjct: 579 RLYQKTSDDQGQ-GKAHLLIGDIHYQQGKYEEAIGHYKE 616
>SB_6794| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1042
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +1
Query: 313 GTVYYALGKAKFALQDFSKVLELKSDFTSARLQRANVYLKLAQYTDAKNDY 465
G VYYALG+ A++ + + L + + R++ N Y L D Y
Sbjct: 389 GNVYYALGEYDHAIEYYQQALPITVE-VGDRIEEGNTYGNLGNCYDGLEKY 438
>SB_38427| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1106
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +1
Query: 301 YFKRGTVYYALGKAKFALQDFSKVLELKSDFTSARLQRANVYLKLAQYTDAKNDYLE 471
YF++G Y LGK + AL+ + + L++ + T +A+V + D +Y E
Sbjct: 15 YFRKGNELYNLGKHREALEQYQQALQV-YESTGNESDQADVRQNIGVVQDRLGNYEE 70
>SB_21748| Best HMM Match : TPR_1 (HMM E-Value=0)
Length = 373
Score = 29.1 bits (62), Expect = 2.3
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Frame = +1
Query: 301 YFKRGTVYYALGKAKFALQDFSKVLEL------KSDFTSARLQRANVYLKLAQYTDAKND 462
YF++G Y LGK + AL+ + + L++ +SD R + L Y +A
Sbjct: 15 YFRKGNELYDLGKHREALEQYQQALQVCISTGNESDQAGVRQNIGVLQESLGNYEEAMKY 74
Query: 463 YLEV 474
Y +V
Sbjct: 75 YQQV 78
>SB_55575| Best HMM Match : TPR_1 (HMM E-Value=2.4e-07)
Length = 112
Score = 29.1 bits (62), Expect = 2.3
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Frame = +1
Query: 283 PHNYLTYFKRGTVYYALGKAKFALQDFSKVLELKSDFTSARLQRANVYL--KLAQYTDAK 456
P N ++RGT Y L A +D SK L+ + A+++R+ V L +L + T+ +
Sbjct: 42 PENAKALYRRGTAYINLKDLDRAQEDISKATNLQPN--DAKIKRSQVLLVKELKKSTEKE 99
Query: 457 NDYLEVTYAD 486
E +++
Sbjct: 100 KRTYEAMFSN 109
>SB_51830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 582
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +1
Query: 319 VYYALGKAKFALQDFSKVLELKSDFTSARLQRANVYLKLAQY 444
+++ K A +DF K ++L DF AR+Q A K A +
Sbjct: 383 IHFLTEKIAEAKEDFEKSIKLNPDFIPARIQLAYCIYKTAVF 424
>SB_21449| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 28.7 bits (61), Expect = 3.1
Identities = 26/123 (21%), Positives = 45/123 (36%), Gaps = 7/123 (5%)
Frame = +1
Query: 142 IFEVVLEFSECATQAEVNKHLELGRDFLARGQLSDALTHYHAAV-------EGDPHNYLT 300
I+E ++E + N + +LG + + L D T AV E DP++ +
Sbjct: 178 IYEALIESPGLNNTVKANAYKQLGWMYYNKEHLGDRATRMQKAVQLLQKAIETDPNSGSS 237
Query: 301 YFKRGTVYYALGKAKFALQDFSKVLELKSDFTSARLQRANVYLKLAQYTDAKNDYLEVTY 480
++ G Y GK A + ++ +Y + Q DA Y+
Sbjct: 238 WYLIGRCYAMQGKVHDAFTSYRHAIDKSEANADTWCSIGVLYQQQNQPMDALQAYVCAIQ 297
Query: 481 ADP 489
DP
Sbjct: 298 LDP 300
>SB_39440| Best HMM Match : TPR_2 (HMM E-Value=6.3e-15)
Length = 244
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = +1
Query: 187 EVNKHLELGRDFLARGQLSDALTHYHAAVEGDPHNYLTYFKRGTVYYALGKAKFALQDFS 366
EV L+ RD + + DAL H AA++ + +NY G LG+ + A +
Sbjct: 5 EVKTLLKKARDSIRNKEYKDALKHCKAALKLEKNNYNALVFVGVCATELGQLEQAQAAYK 64
Query: 367 K 369
K
Sbjct: 65 K 65
>SB_21064| Best HMM Match : TPR_2 (HMM E-Value=3.5e-09)
Length = 372
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/58 (25%), Positives = 23/58 (39%)
Frame = +1
Query: 223 LARGQLSDALTHYHAAVEGDPHNYLTYFKRGTVYYALGKAKFALQDFSKVLELKSDFT 396
L G+ + + H +E D N F+R + A + A DF + EL T
Sbjct: 284 LLLGEYYEVIKHTSTVLEKDKDNVKALFRRAKAHKACWDPEEARSDFKRAAELDPSLT 341
>SB_38919| Best HMM Match : Fumarate_red_D (HMM E-Value=4.7)
Length = 479
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = -3
Query: 345 FCFSEGIIHCTSLEVCKIVVWISFDSCVIMSQSVRELSSSQEVS 214
FCF E + +L VC VWI+ VI SV++ +++++V+
Sbjct: 118 FCFVERVSKAAALSVCFAHVWITV--IVISWLSVKDEANTRQVN 159
>SB_6548| Best HMM Match : Helicase_C (HMM E-Value=0.003)
Length = 1063
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 187 EVNKHLELGRDFLARGQLSDALTHYHAAVEGD 282
E N+ L + ARG + AL HY A+E D
Sbjct: 1009 EYNRQYRLAEQYEARGDETPALEHYFQALEID 1040
>SB_28698| Best HMM Match : TPR_2 (HMM E-Value=0.00019)
Length = 261
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +1
Query: 148 EVVLEFSECATQAEVNKHLELGRDFLARGQLSDALTHYHAAVEGDP 285
EV L E + +H LG A G+L +A TH+ ++ +P
Sbjct: 144 EVDLNVIESNLKQSFEEHFTLGEILKASGELDEAGTHFRNVLDLNP 189
>SB_56862| Best HMM Match : TPR_2 (HMM E-Value=1.4e-22)
Length = 300
Score = 27.5 bits (58), Expect = 7.1
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Frame = +1
Query: 301 YFKRGTVYYALGKAKFALQDFSKVLEL------KSDFTSARLQRANVYLKLAQYTDAKND 462
Y G V+ + GK + A+ ++ L L +S A L NVY +Y DA N
Sbjct: 151 YHGMGNVHRSQGKYEDAMNNYQHALSLFQKAGDESGQAFASLSMGNVYRSQGKYEDALNI 210
Query: 463 Y 465
Y
Sbjct: 211 Y 211
>SB_54632| Best HMM Match : TPR_1 (HMM E-Value=1.4e-20)
Length = 1195
Score = 27.1 bits (57), Expect = 9.4
Identities = 16/61 (26%), Positives = 23/61 (37%)
Frame = +1
Query: 322 YYALGKAKFALQDFSKVLELKSDFTSARLQRANVYLKLAQYTDAKNDYLEVTYADPYNEE 501
Y G AL+D+ L T A + +T A ND+ E+ DP +
Sbjct: 75 YSQRGDMLLALEDYKIASRLLPSKTEAMFEIGMYRFNNENWTGAVNDFTEILEQDPQDSR 134
Query: 502 A 504
A
Sbjct: 135 A 135
>SB_48719| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1880
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Frame = -3
Query: 363 KVLKCEFCFSEGIIHCTSLEV-CKIVVW 283
K + CE CF + I CT L V C W
Sbjct: 1749 KSVACEVCFGQQHIKCTELNVKCVNATW 1776
>SB_42965| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 760
Score = 27.1 bits (57), Expect = 9.4
Identities = 25/110 (22%), Positives = 48/110 (43%), Gaps = 13/110 (11%)
Frame = +1
Query: 181 QAEVNKHLELGRDFLARGQLSDALTHYHAAV-----------EGDPHNYL--TYFKRGTV 321
Q + HL++G +G+ +A+ HY A+ +G H + T+ ++G
Sbjct: 443 QGQGKAHLQIGNTHHQQGKYEEAIGHYKEALRLYQKTSDDQGQGKAHLLIGNTHNQQGKY 502
Query: 322 YYALGKAKFALQDFSKVLELKSDFTSARLQRANVYLKLAQYTDAKNDYLE 471
A G K AL+ + K +++ A L+ + + +Y +A Y E
Sbjct: 503 EEARGYYKEALRLYQKTSDVQGQ-GEAHLRIGKTHYQQGKYEEAIGHYKE 551
>SB_29745| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.04)
Length = 1481
Score = 27.1 bits (57), Expect = 9.4
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Frame = +1
Query: 274 EGDPHNYLTYFKRGTVYYALGKAKFALQDF--SKVL---ELKSDFTSARLQRANVYLKLA 438
+ D HN L ++ V L + + +L+D S + +LK+ +R + LKL
Sbjct: 412 DADKHNELLAYRLEEVQGKLSRTQSSLRDIMDSSAIAQRDLKAKMNEFEFERDELSLKLQ 471
Query: 439 QYTDA 453
+Y DA
Sbjct: 472 EYEDA 476
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,270,773
Number of Sequences: 59808
Number of extensions: 227158
Number of successful extensions: 910
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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