Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304A12f
         (521 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-conta...    30   0.041
M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles ...    25   1.5  

>AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative
           TPR-containing phosphoprotein protein.
          Length = 1200

 Score = 30.3 bits (65), Expect = 0.041
 Identities = 21/73 (28%), Positives = 30/73 (41%)
 Frame = +1

Query: 247 ALTHYHAAVEGDPHNYLTYFKRGTVYYALGKAKFALQDFSKVLELKSDFTSARLQRANVY 426
           AL  Y   +  DP N       G V    G    A   F++V E  +DF    +  A++Y
Sbjct: 631 ALAIYKQVLRNDPKNIWAANGIGAVLAHKGCIIEARDIFAQVREATADFCDVWINIAHIY 690

Query: 427 LKLAQYTDAKNDY 465
           ++  QY  A   Y
Sbjct: 691 VEQKQYISAIQMY 703



 Score = 23.4 bits (48), Expect = 4.7
 Identities = 12/58 (20%), Positives = 28/58 (48%)
 Frame = -2

Query: 295 DSCVDLLRQLRDNESKRQRVVLEPRSLXXXXXXXXXXXASRTLKILKQLQRLKTQGRE 122
           + C DLL+Q + + S+ +++  E RSL             R  +  ++++ ++ +  E
Sbjct: 814 NQCQDLLQQAQYHVSRARKIDEEERSLRQKQELEREEFKRRQAEDRRRMEEMRRKAHE 871


>M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 975

 Score = 25.0 bits (52), Expect = 1.5
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 214 RDFLARGQLSDALTHYHAAVEGDPHNYL 297
           R F A  QL    T +HAA +  PH+ L
Sbjct: 601 RSFEAGTQLDAIYTDFHAAFDSLPHSLL 628


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 454,125
Number of Sequences: 2352
Number of extensions: 8667
Number of successful extensions: 11
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 47783067
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)