Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304A11f
         (521 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    21   5.0  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    21   6.6  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    21   8.7  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    21   8.7  

>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +2

Query: 53  AKEEKGTPKAVEEKKQ 100
           AKE K   K +EEK Q
Sbjct: 210 AKERKQNKKRIEEKSQ 225


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 417 RVSRLYTEQXTFFTTSTVLMCSW 349
           RV  ++T    FFT   VLM  W
Sbjct: 418 RVCLVFTLTGPFFTFCNVLMEMW 440


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +2

Query: 44  VAFAKEEKGTPKAVEEKKQDKR 109
           +AFA+EE+G  +A  ++  + R
Sbjct: 16  IAFAQEEEGGDEATADELCENR 37


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +2

Query: 44  VAFAKEEKGTPKAVEEKKQDKR 109
           +AFA+EE+G  +A  ++  + R
Sbjct: 16  IAFAQEEEGGDEATADELCENR 37


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,101
Number of Sequences: 336
Number of extensions: 1640
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)