Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304A11f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0275 - 21469391-21470650 30 0.98
04_04_1514 + 34114626-34114637,34114766-34114841,34115022-34115347 30 1.3
11_01_0154 + 1281434-1281725,1281923-1281987,1282112-1282175,128... 29 3.0
06_03_0079 - 16301056-16301611,16301745-16301906,16306776-163071... 29 3.0
06_01_0778 + 5816588-5816885,5817554-5817615,5818764-5818905,581... 29 3.0
04_03_0286 + 13915705-13915984,13916478-13917062,13918188-139186... 28 4.0
06_03_1097 - 27570037-27570262,27570575-27570730,27570763-275708... 28 5.2
03_05_0576 + 25765137-25766420 28 5.2
07_03_0305 - 16475127-16476017,16476058-16478067 27 6.9
01_07_0036 + 40647046-40647100,40647120-40647571,40648135-406482... 27 9.1
>02_04_0275 - 21469391-21470650
Length = 419
Score = 30.3 bits (65), Expect = 0.98
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +1
Query: 376 GKEGALFRIQSRNTSPIPSRRKYPMR*KCPYLSPTPLKRKFPLP 507
G A +R+T+P+ R +P R + +L + +KR+ P P
Sbjct: 173 GSNSAAAATAARSTAPMAPRVNFPQRTRTQFLPSSGVKRRMPSP 216
>04_04_1514 + 34114626-34114637,34114766-34114841,34115022-34115347
Length = 137
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = +2
Query: 29 ASLAVVAFAKEEKGTPKAVEEKKQDKR 109
ASL V AKEEK K EEKK DK+
Sbjct: 65 ASLLSVGPAKEEKKEEKKPEEKKDDKK 91
>11_01_0154 +
1281434-1281725,1281923-1281987,1282112-1282175,
1282303-1282449,1282583-1282677,1284358-1284465
Length = 256
Score = 28.7 bits (61), Expect = 3.0
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -1
Query: 95 SSLRLPSVCLSPPWQRQPRPTMPPK*PCTS 6
+++ PS+ S P R+P +PP PC+S
Sbjct: 3 AAVATPSLLFSSPTPRRPSSCLPPPPPCSS 32
>06_03_0079 -
16301056-16301611,16301745-16301906,16306776-16307134,
16307372-16307884
Length = 529
Score = 28.7 bits (61), Expect = 3.0
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = +1
Query: 13 HGYFGGIVGRGCL--CQGGERHTEGSRREETRQKG 111
HGY GG GRG GG + E + R E R +G
Sbjct: 335 HGYTGGADGRGQYRGSDGGRKDGEATPRREIRVRG 369
>06_01_0778 +
5816588-5816885,5817554-5817615,5818764-5818905,
5819969-5820064,5820147-5820266,5820401-5820663,
5821507-5821617
Length = 363
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -1
Query: 386 PSLPPQQF*CARGVHDDRGGSRLRWQL 306
P LPP+ C VH D GG+ +RW L
Sbjct: 247 PPLPPE---CNAQVHTDYGGAAVRWGL 270
>04_03_0286 +
13915705-13915984,13916478-13917062,13918188-13918661,
13918963-13920208,13920282-13920297
Length = 866
Score = 28.3 bits (60), Expect = 4.0
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +1
Query: 16 GYFGGIVGRGCLCQGG 63
GYF I+G CLC GG
Sbjct: 258 GYFAPILGYNCLCDGG 273
>06_03_1097 -
27570037-27570262,27570575-27570730,27570763-27570881,
27572154-27572236,27574991-27575041,27575218-27575674,
27576139-27576228,27576672-27576701
Length = 403
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = -1
Query: 125 LCHRCPFCLVSSLRLPSVCLSPPWQRQPRPTM 30
L HR P L S R + S WQ+QPR M
Sbjct: 301 LVHRLPQALRFSNRFSCILSSARWQQQPRDGM 332
>03_05_0576 + 25765137-25766420
Length = 427
Score = 27.9 bits (59), Expect = 5.2
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -1
Query: 77 SVCLSPPWQRQPRPTMPP 24
+V +SPP Q +PRP +PP
Sbjct: 98 AVSVSPPTQPRPRPELPP 115
>07_03_0305 - 16475127-16476017,16476058-16478067
Length = 966
Score = 27.5 bits (58), Expect = 6.9
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -1
Query: 65 SPPWQRQPRPTMPPK*PC 12
SPP Q P P +PP PC
Sbjct: 26 SPPPQTAPAPALPPSNPC 43
>01_07_0036 +
40647046-40647100,40647120-40647571,40648135-40648257,
40648407-40648461,40648613-40648722,40649352-40649531,
40650003-40650101,40651182-40651280,40652195-40652289,
40652290-40652378,40652739-40652901,40653299-40653404,
40655647-40655829,40656059-40656286,40656373-40656486
Length = 716
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -2
Query: 160 IATSEIMSSIRS-YVIDAPFVLFLLFDCLRCAFLL 59
+ TSEI + S +V PF++ L+ C+ CA LL
Sbjct: 387 LTTSEIDYYVWSCFVYSVPFLVTLISCCMTCALLL 421
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,635,531
Number of Sequences: 37544
Number of extensions: 207481
Number of successful extensions: 683
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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