Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304A11f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15501| Best HMM Match : Not1 (HMM E-Value=4.6e-37)                  30   1.3  
SB_29526| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_10367| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_32263| Best HMM Match : Ldh_1_C (HMM E-Value=8.80015e-42)           28   5.4  
SB_23538| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_56313| Best HMM Match : zf-C2H2 (HMM E-Value=2.3e-14)               27   7.1  
SB_52207| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_28906| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_19708| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_15501| Best HMM Match : Not1 (HMM E-Value=4.6e-37)
          Length = 509

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = -2

Query: 229 VSFLVTEADTFVPSIAFVTAVAFIATSEIMSSIRSYVIDAPFVLFLLFDCLRCAF 65
           VS  V EA  F  S   + A+ F  +  ++ +I   V D P +  + F CLRC F
Sbjct: 275 VSDPVLEAINFQVSDPLLEAINFQVSDPVLEAINFQVSD-PVLEAINFQCLRCRF 328


>SB_29526| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1120

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = -2

Query: 229  VSFLVTEADTFVPSIAFVTAVAFIATSEIMSSIRSYVIDAPFVLFLLFDCLRCAF 65
            VS  V EA  F  S   + A+ F  +  ++ +I   V D P +  + F CLRC F
Sbjct: 883  VSDPVLEAINFQVSDPLLEAINFQVSDPVLEAINFQVSD-PVLEAINFQCLRCRF 936


>SB_10367| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 481

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 449 IGYFLLDGIGDVFLDCIRNXAPSLP 375
           + YF  DGIG++  +C+RN A S P
Sbjct: 438 VNYFNADGIGELSGNCLRNNANSRP 462


>SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1831

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 18/58 (31%), Positives = 25/58 (43%)
 Frame = -1

Query: 182  FRDRRSLHRYLRNYVLHKILCHRCPFCLVSSLRLPSVCLSPPWQRQPRPTMPPK*PCT 9
            + D R   R+ +    HK   HRCP  L  S++  + C  P +    R T  P  P T
Sbjct: 1146 YADPRDCSRFYQCDAFHKTFLHRCPAGLKWSVK-KTACDWPRYVDCDRTTSTPPTPTT 1202


>SB_32263| Best HMM Match : Ldh_1_C (HMM E-Value=8.80015e-42)
          Length = 411

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 389 APSLPPQQF*CARGVHDDRGGSRLRWQL 306
           APS+P + F C   +  +RGGS++  +L
Sbjct: 222 APSIPKENFSCLTRLDQNRGGSQIAGRL 249


>SB_23538| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 501

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 124 YVIDAPFVLFLLFDCLRCAFLLL 56
           YVI  P  L L  DCL C F+++
Sbjct: 41  YVIGVPMCLVLTDDCLLCRFIVM 63


>SB_56313| Best HMM Match : zf-C2H2 (HMM E-Value=2.3e-14)
          Length = 910

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 170 RSLHRYLRNYVLHKILCHRCPFCLVSSLR 84
           R+L+R+L     HK     CPFCL   +R
Sbjct: 220 RNLNRFLSRQTKHKGRMFYCPFCLHGFVR 248


>SB_52207| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 283

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 170 RSLHRYLRNYVLHKILCHRCPFCLVSSLR 84
           ++L+R+L     HK     CPFCL   LR
Sbjct: 98  QNLNRFLSRQTKHKGRMFYCPFCLHGFLR 126


>SB_28906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1191

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -1

Query: 521 DVFLDGKGNFLFNGVGLRYGHFHLIGYFLLDGI 423
           D   D  G  +     L YGH ++  Y LLDGI
Sbjct: 752 DAIQDAMGTSMSLAKALYYGHVYVAQYPLLDGI 784


>SB_19708| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1548

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +2

Query: 53  AKEEKGTPKAVEEKKQDKRGIYDIGS 130
           +++EKGTPK  +E+K+ K G Y+  S
Sbjct: 34  SRDEKGTPKTTKEQKK-KEGQYNCPS 58


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,863,921
Number of Sequences: 59808
Number of extensions: 210894
Number of successful extensions: 738
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)